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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGgtgaaactaactacctatttggcctttgtaatatctgagaaattttcaaagtttagagttaaccttgaacttggtggacctgtgggcctgagcttcttattgaatttccttacgatccatttgtgttgtgggttccttagctttaatctttcatttgaatgtattaatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G14530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 5
GCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGgtgaaactaactacctatttggcctttgtaatatctgagaaattttcaaagtttagagttaaccttgaacttggtggacctgtgggcctgagcttcttattgaatttccttacgatccatttgtgttgtgggttccttagctttaatctttcatttgaatgtattaatttcag
|||||||| ||||| |||||||| || || ||||||||||  || |||||||| || || || || ||||||||||||  ||      || | |||  || | |      |  | | | |    | || |      ||||||||  |     || || | |||   |   | | | | |  ||                                                              
GCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAGgtgaaa--aa------atcttgcccatg-attgcacatgttactgttaccactcagcgcagtggttgaacttctt---tttgaggccatgaatgttgcaatcagtctttttc-------------------------------------------------------------

upper sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 5
GCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGgtgaaactaactacctatttggcctttgtaatatctgagaaattttcaaagtttagagttaaccttgaacttggtggacctgtgggcctgagcttcttattgaatttccttacgatccatttgtgttgtgggttccttagctttaatctttcatttgaatgtattaatttcag
|||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| || || |  |||||||||| ||    | | | | | || ||    |  ||  || ||     | | |||    ||    |    ||   ||||    |   | ||   |    || ||   |                                                                  
GCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAATGCAGTGGTTTATGCCATTCAGgtgacac----ttcttgtcttgcttt----aagtcccagcaaaggggagattttgacattggtttccttctgcatggaaacttaaccatgttttgtaaatagagcatt-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477218|gb|EG519810.1|EG519810
EST:     GACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAG                         ATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATC
genomic: GACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGgtgaaactaa ... ttaatttcagATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATC
EST: gi|116477220|gb|EG519812.1|EG519812
EST:     GACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAG                         ATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATC
genomic: GACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGgtgaaactaa ... ttaatttcagATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATC
EST: gi|86039847|gb|DR335602.1|DR335602
EST:     GACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAG                         ATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGT
genomic: GACTGAGGCCAAGTTTCTTCACAATTAATGCAGTTGTATACGTAATTCAGgtgaaactaa ... ttaatttcagATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGT