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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTCACTCTTCATTTGGTGAGCTCCCTCAGTGGGCTGTCGTCGGTGATACATTTCCAGTGGGATGTGCTTTTGATGAATCTATTGTTCACCACAAGgtacataaggtccttaaacacaatttaaaaactttgtttgagtttcaaaacatatgaaaaattgattccattgcgggtttcttgatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G14520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14520.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G126900_T02 (Zea mays), 5'ss of exon 4
-------------TCTTCTTCACTCTTCATTTGGTGAGCTCCCTCAGTGGGCTGTCGTCGGTGATACATTTCCAGTGGGATGTGCTTTTGATG-AATCTATTGTTCACCACAAGgtacataaggtccttaaacacaatttaaaaactttgtttgagtttcaaaacatatgaaaaattgattccattgcgggtttcttgatgtag
              || || ||| |    || || ||||||||||||||||||||||||||| |        ||  ||||  |  |   |||| ||| || |  |||  |         | |   |  ||      |                                                                   
ACCTGGGCAAGGTGCTGCTGCACCCAAGCTTCGGGGAGCTCCCTCAGTGGGCTGTCGTCGgtaag-------caaggggaaatcttggcgatgcaatataatactcaaaattcctcctctgaaacctgtagctttcag------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878336|gb|AU239167.1|AU239167
EST:     ATACATTTCCAGTGGGATGTGCTTTTGATGAATCTATTGTTCACCACAAG                         TCCTTCAAGGAGAATCCANACTATGATA
genomic: ATACATTTCCAGTGGGATGTGCTTTTGATGAATCTATTGTTCACCACAAGgtacataagg ... cttgatgtagTACTTCAAGGAGAATCCAGACTATGATA