1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatttttcccatgttcctcctttgattatctgttttcagtttgtttctagatttttctgacatgtgttccaatattgcag
species | Arabidopsis thaliana |
transcript | AT1G13560.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG GTTGTGACGCGCTTGCTTGTGCGEST: gi|86070077|gb|DR365834.1|DR365834
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTTGCTTGTGCG
EST: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG GTTGTGACGCGCTTGCTTGTGCGEST: gi|86070078|gb|DR365835.1|DR365835
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTTGCTTGTGCG
EST: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG GTTGTGACGCGCTTEST: gi|86070081|gb|DR365838.1|DR365838
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTT
EST: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG GTTGTGACGCGCTTGCTTGTGCG
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTTGCTTGTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatttttcccatgttcctcctttgattatctgttttcagtttgtttctagatttttctgacatgtgttccaatattgcag
- - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT