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GTTCGTGTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGAAGgtaattcttttcttctcatatttatactataagagcacactagaaactgtgggcggtttagcaacaacaaattttgaagtttgttttctcatctatctga...
species | Arabidopsis thaliana |
transcript | AT1G12840.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCCATT-ACCGAAAGCAAAGTGGAAG CTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGAEST: gi|125230858|gb|EL244943.1|EL244943
genomic: GCCATTAACCGAAAGCAAAGTGGAAGgtaattcttt ... tttgtctcagCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGA
EST: AACTCAATGCCATTAACCGAAAGCAAAGTGGAAGG CTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGEST: gi|164035646|gb|ES192485.1|ES192485
genomic: AACTCAATGCCATTAACCGAAAGCAAAGTGGAA-Ggtaattcttt ... tttgtctcagCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCG
EST: GGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGAAG CTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGA
genomic: GGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGAAGgtaattcttt ... tttgtctcagCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGTGTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGAAGgtaattcttttcttctcatatttatactataagagcacactagaaactgtgggcggtttagcaacaacaaattttgaagtttgttttctcatctatctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaca