1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAGCTGAAGAAACAGCAAAGAAGCTTGATTTGGATGGGTTGGTGGTTATCGGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttgcagttgaatctgttatgttgaaacttatttatcttaggcgaaagtagttgttcttgaagatccatgtgaccagaatctttaatatttgctgattcagcatttgacttattatctacttgtataattag
species | Arabidopsis thaliana |
transcript | AT1G12000.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCEST: gi|164046115|gb|ES162500.1|ES162500
genomic: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCC
EST: CCAATGCTTGCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGGEST: gi|125020009|gb|EL092278.1|EL092278
genomic: CCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGG
EST: CTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGGEST: gi|124794408|gb|EH884087.1|EH884087
genomic: CTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGG
EST: AACACCAATGCTTGCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGGEST: gi|164231176|gb|ES041098.1|ES041098
genomic: AACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGG
EST: GCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGGEST: gi|125065356|gb|EL132616.1|EL132616
genomic: GCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGG
EST: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGEST: gi|164215770|gb|ES019641.1|ES019641
genomic: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTG
EST: GCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTG-AAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGGEST: gi|164196437|gb|ES095419.1|ES095419
genomic: GCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGG
EST: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCAEST: gi|116438055|gb|EG480647.1|EG480647
genomic: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCA
EST: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCEST: gi|116438054|gb|EG480646.1|EG480646
genomic: GGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCC
EST: TCTTGCTGAAAACTTCAG GAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGG
genomic: TCTTGCTGAAAACTTCAGgtaaaccttg ... gtataattagGAGTAAGAACTTGAAAACCCGAGTCATTGGGTGCCCCAAGACCATTGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTGAAGAAACAGCAAAGAAGCTTGATTTGGATGGGTTGGTGGTTATCGGTGGAGATGATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGgtaaaccttgcagttgaatctgttatgttgaaacttatttatcttaggcgaaagtagttgttcttgaagatccatgtgaccagaatctttaatatttgctgattcagcatttgacttattatctacttgtataattag
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG