Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGTTAGGAACGTACCAGCGGACCCAGATGAGTCCATTAGTGACAGTGTGGAACATTTCTTTCTAGTTAACCATCCGGACCATTATCTTACGCATCAGgttataagctcattcattgcttagaaagaatcagtctttttcctcgggttttgtttaaattatggaagttgattatacccag

Basic information

species Arabidopsis thaliana
transcript AT1G11960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g35050.3 (Oryza sativa), 5'ss of exon 5
TTTGGTTAGGAACGTACCAGCGGACCCAGATGAGTCCATTAGTGACAGTGTGGAACATTTCTTTCTAGTTAACCATCCGGACCATTATCTTACGCATCAGgttataagctcattc-attgcttagaaagaatcagtc------tttttcctcgggttttgtttaaattatggaagttgattatacccag-----------
  | ||  ||||  ||||  | || || ||||| || ||| ||||   ||||||||||||||| || || |||||||| ||||||||||||||||| ||||| |||     |||  |  |  | | |   ||   ||      | ||||     | |  ||| ||| |    |      | ||    |            
CCTTGTGCGGAATATACCGCCTGATCCTGATGAATCAATTGGTGAGCTTGTGGAACATTTCTTCCTTGTAAACCATCCTGACCATTATCTTACGCACCAGgtaatatttatattttacagtctggtatttatgcttcactggatctttctgtctggtcagttcaaagttcatagcgaagtcatgtgaatagttatatgcc