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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGgtacatctctgctgtttccaaattgcatatatactaggtttgagacaattctgatctcagtttcccatcatgtcattcttag

Basic information

species Arabidopsis thaliana
transcript AT1G10600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10600.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G03710.1 (Glycine max), 5'ss of exon 8
ACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGgta--catctctgctgtttccaaattgcatatatactaggtttgagacaattctgatctcagtt--tcccatcatgt--cattcttag------------
|| |||||||||||  |||||||||||||||| || |||||||| || || ||||| || |||||        |   | |||     |   | | |   |   | | | |  ||| |  | |||  |  |  || | |||  |    ||||            
ACACATCCTTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAGgtgattgatccaagttttttttgttattacacacttttcttgtaaaagcatttttttttcaactattgtcaacttgtaacggcattagagtattatctcc

upper sequence: AT1G10600.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0127g00710.t01 (Vitis vinifera), 5'ss of exon 7
ACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGgtacatctctgctgtttccaaattgcatatatactaggtttgagacaattc--tgatctcagtttcccatcatgtcattcttag-----------------------
|| |||||||||||| ||||||||||||||||  ||||| |||| || || || || |||||||||  |  ||      |  |||  |    |||  | | ||||||  |  ||  |  ||| || || ||   | |   || ||||                       
ACACATCCTTCTCAGAGTTGTTTCATGTCATCAATAGATTTGCACACGCAATACTCATATCAGgtaattgact-----ctttaaagggtgggtatttttgttttgaggaacctcatttgtcttaggttacctagagg--gtttttagttgtgtttctatttgaagtgctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086322|gb|DR382081.1|DR382081
EST:     CATGTCATCTGTAGATCTGCATACACATTA-TCTTATCAG                         GTAATGGTGCCAGAGGCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCT
genomic: CATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGgtacatctct ... tcattcttagGTAATGGTGCCAGAGGCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCT