Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGAGCTAAAATCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAGgtatgagtatattagattaggccacttcttgactttgctctgattcgagatctctcaaggacatcttcttattatctacttgtgtgtttctttaaag

Basic information

species Arabidopsis thaliana
transcript AT1G09430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 5
GTTCGAGCTAAAATCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAGgtatg-agtatattagattagg---ccacttcttg--actttgct-ctgattcgagatctctcaaggacatcttcttatta-tctacttgtgtgtttctttaaag
|||||||  ||||| ||  ||||||||| |||||| ||||||||||||||||||||| | | | || || ||        | |  ||  |||||| |  | || | | |      ||  |||  |  | |     |||  | |  || | ||     
GTTCGAGGGAAAATTGGTGACTTCATAAAGGGTGCGTTTGCTGTATTTCAAGgtatgcaatcttttggaataaaaaattgccttctgccactttggtatttatgcaaaaaaaaaaaaaaacagatcttcacaggcctatgtttaagtgtttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125301422|gb|EL315507.1|EL315507
EST:     TCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAG                         ATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAG
genomic: TCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAGgtatgagtat ... ttctttaaagATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAG