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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGATCAGCTCGTGGAGCAAACCATTTCTTGAATCATTTGGCAACAGGAAAGATCTTCAGTTGTTTGAGgtactgattctgaatcgtttgtgctattcgcacttatatcagattttagaacctgcacgagtgcttttttagcagctgtttttctcccattttattcaaaaacttattttcttgtaattatag

Basic information

species Arabidopsis thaliana
transcript AT1G08220.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875234|gb|AU236065.1|AU236065
EST:     ACCATTTCTTGAATCATTTGGGCAACAGGAAAGATCTTCAGTTGTTTGAG                         GNTTCATTTATAGACAAATGGCTGCTGGGCTTGGCCCCCATTAAGAAA
genomic: ACCATTTCTTGAATCATTTGG-CAACAGGAAAGATCTTCAGTTGTTTGAGgtactgattc ... gtaattatagGTTTCATTTATAGACAAATGGCTGCTGGGCTTGGCCCCCAT-AAGAAA
EST: gi|86073338|gb|DR369095.1|DR369095
EST:     ACCATTTCTTGGATCATTTGGCAACAGGAAAGATCTTCAGTTGGTTTGAG                         GTTTCATTTATAGA
genomic: ACCATTTCTTGAATCATTTGGCAACAGGAAAGATCTTCAGTTG-TTTGAGgtactgattc ... gtaattatagGTTTCATTTATAGA