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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcagagatttgttggaaagtagtttgttttctaggggaaggaaagcatatgtttgaatacttactcggaaaattgatgtgagtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G08190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os04g11880.3 (Oryza sativa), 5'ss of exon 5
TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtc---agagatttg-ttggaaagtag-------tttgttttctaggggaaggaaagcatatgtttgaa--tacttactcggaaaattgatgtgagtgtag
|||||||| ||||||||||| || |  |||||||||||| | || || | ||||||||| ||||| || || ||| | |||||||||||||||||| |||||     || || || ||  | |||         | | ||||||     |  ||||   |     ||||   | ||  | |  | |||  |   |    ||
TCATGGAAAAATGATGAACTTACCACAGATGCTCTTCCTATTCATGGTTATGAGCATTATAAGGCAAAGGATTATGCTCTTGCTCATGCTCCTTTCTCAGgtttaatgaaatgtgctttaacagtgaatgaacttctcttttcttcttcactgaaacttttctaatgaaggaattttattgttatatttttaccacc-cag

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 5
TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcaga--gatt-tgttggaa----agtag--tttgttttctaggggaaggaaagcatatgtttgaatacttactcggaaaattgatgtga-gtgtag
|||||||| |||||||| || || |  |||||||| ||| | || || | ||||||||||||||| || |||||| | ||||| ||||| |||||| |||||   |  |||| || |  ||    ||| |  ||| ||||||    || |  ||   |     ||||      ||       |||   ||   |  ||
TCATGGAAAAATGATGAGCTTACTACAGATGCTCTGCCTATTCATGGTTATGAGCATTACAAGGCAAAGGACTATGCTCTTGCACATGCACCTTTCTCAGgtttaattgattgtgctctaacatcagtggcatttcttttcttattgatgagaacttttctaatgaaggaaccctgattctcttgtcctgtcattcag

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 5
TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcag-agatttgttggaaagtagtttgttttctaggggaaggaaagcatatgtttga-atact-tactcggaaaat-tgatgtgagtgtag---------
 ||||||| |||||||| ||  | |  ||||||||||| ||||| || ||||||||||||| |||||| |||||||| |||||||||||||| ||| ||||| |  | ||   |||    ||   |  | || |   | |     ||| ||||||  | || || || | |   | | |||| | | |             
ACATGGAATAATGATGAGCTTTCTACAGATGCTCTTCCAGTACATGGGTTTGAGCATTACAGGGCGAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGgttaacatatggtttgtgttgtttatgatgttttgaagcatattcagc-tatgttgaatatgctgtatttgatcagtgtgatataaatacctgcatggtgg

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 5
TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcagagatttgttggaaagtagtttgttttctaggggaaggaaagcatatgtttga-atact-tactcggaaaat-tgatgtgagtgtag---------
 ||||||| |||||||| ||  | |  |||||||| || ||||| || || |||||||||| ||| || |||||||| |||||||||||||| ||| ||||| |    || ||| |       | || | | | |  | |     |  ||||||  | || || || | |   | | |||| | | |             
ACATGGAATAATGATGAGCTTTCTACAGATGCTCTGCCAGTACATGGGTTCGAGCATTACAGGGCAAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGgttaacatttggtttgtgttgtttatgctgttttgaagcatatttggctatgttgaatatgctgtatttgatcagtgtgatataaatacctgcatggtgg

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv15s0024g01120.t01 (Vitis vinifera), 5'ss of exon 3
-------------------------------------------------------------TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcagagatttgttggaaagtagtttgttttctaggggaaggaaagcatatgtttgaatacttactcggaaaattgatgtgagtgtag
                                                              ||||||| |||||| | ||  | |  |||||  | |||||||| |||||||||||||||||||| || || |||||||||| |||||||| |||| |||                                                                                        
ATTTAGCAGCACCATTCCATCACGCCAGGGAAATGCGCAAAGACCTGAAGTACGCATAGTCACATGGAATAATGATCAGCTTGCGACAGATGCCTTGCCTgtacatggctttgagcattacaaggcaaaggattattcccttggtcatgctcttttctcag----------------------------------------------------------------------------------------

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 5
TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcagagatttgttggaaagtagttt--gttttctaggggaaggaaagcatatgtttgaatacttactcggaaaattg-atgtgagtgtag
 ||||||| |||||||| ||  | |  |||||  | |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| | | || | |||      |  ||  || || |    |||   |    ||  | ||||  | |  |   |   ||  || ||| | |||
ACATGGAATAATGATGAGCTTGCGACAGATGCCTTGCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCCCTTGCTCATGCTCCTTTCTCAGgt-aaacatattttgctttcaaacttcagtcttgtgcatgaacagataattaactctgaaatcattgtatcacttttacatttgaatatag

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S104_112V6.1 (Physcomitrella patens), 5'ss of exon 5
TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcag--------agatttgttggaaagtagtt-tgtt----ttctaggggaaggaaagcatatgtttgaatacttactcggaa--aattgatgtgagtgtag-------------------------------------------------------------------------------------------
 || || | ||||| ||  |  | | |||||| ||| || | || |||| |||||||||||| || ||||||||   ||||||||||||||||||    |||  |        | |  | ||  |   |  || ||      |  ||   |   |   | |  ||| ||| |||    | |||   | || || |   | ||                                                                                            
ACAAGGCAGAATGAGGAGTTGGCGACGGATGCACTTTCTATTCATGGCTATGAGCATTACAAAGCTAAAGACTACGTCCTTGCTCATGCTCCTTTTATTGgtgcgtttgtctcacaacttttccaggatgattgtgccaaagtagtaactgtgaggctggagctgtgtgagtacgatttaggatgtattttattttgatttactcatgttgtatcagtcaattcctttggattgatgatgaagatctgattatggaatgctgagcatctgattgtgcatgtatcctgatttcag