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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttggtgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag

Basic information

species Arabidopsis thaliana
transcript AT1G06820.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttggtgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag
|| || |||||||||||||||||||| ||||| || || ||||| |||||||| |||||| |     ||  |     |  |   | | ||  || | |  || | ||| | || ||| | |  |  ||  ||||
TGCTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATTAATGCAAGCATGgtaagtggaatgcatgactctcagaattttgcttctgattcatttaaatttctgttatctcaagggtgaaataacag

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G106531_T02 (Zea mays), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttggtgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag--------------
||||| |||||||||||||||||||| ||||| || || ||||| |||||||| |||||| | |   | ||  |    | | | |  | |     | |  ||   ||| | || |||||   |    |  ||||              
TGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATGgtaagttcaatcttaatcttctggatcttcatttcaaattcatttggatttctgttatcttaatgccaatataacaggtcttgtgcgatag

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G106531_T01 (Zea mays), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttggtgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag
||||| |||||||||||||||||||| ||||| || || ||||| |||||||| |||||| | |   | ||  |    | | | |  | |     | |  ||   ||| | || |||||   |    |  ||||
TGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATGgtaagttcaatcttaatcttctggatcttcatttcaaattcatttggatttctgttatcttaatgccaatataacag

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G108457_T02 (Zea mays), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttgg-tgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag
||||| |||||||||||||||||||| ||||| || || ||||| |||||||| |||||| | |||  | ||   | | ||| | || | ||    | |  ||    || | || ||| |        |  ||||
TGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATGgtaag-ttcaagcttgatcttctggatctccattccaaattcatttggacttctgttatctcagtatcaatataacag

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G108457_T01 (Zea mays), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttgg-tgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag--------------
||||| |||||||||||||||||||| ||||| || || ||||| |||||||| |||||| | |||  | ||   | | ||| | || | ||    | |  ||    || | || ||| |        |  ||||              
TGTTTTATTGTGAGCACAGTCAATGCCTTGCAAACACCCATGATAAATGCAAGCATGgtaag-ttcaagcttgatcttctggatctccattccaaattcatttggacttctgttatctcagtatcaatataacaggtcttgtgcgatag

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttggtg--tctactcgtgttaccctttattttattttttcttatgtcttcaaggacag----------------------
||||| || |||||||||||||||||||||||||| ||||||||||||||    ||||||   |  |  ||| |   |||  |   | || |  | |||  ||| |||  |||| ||    |||||   ||   ||                      
TGTTTTATAGTGAGCACAGTCAATGCTTTGCAGACACCAATGATCAATGCTGCCATGgtaatctattcatttatctttttcattcttttagttcttttaatctt-attgcatttcttaaattgtctaggagaggaggattcatgcttgcattcattgt

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttggtgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag-------------------------
||||| || |||||||||||||||||||||||||| ||||||||||||||    ||||||   |  |  ||| |   |||  | |||    ||  |  |  | || || |  |||||||  |  || |||| ||                         
TGTTTTATAGTGAGCACAGTCAATGCTTTGCAGACACCAATGATCAATGCTGCCATGgtaatctcttcatttatctttttcat-tctttcagttctttcaatcatatt-tcatttcttaaattgtctaggagagaaggattcatgcttgcattcattgc

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 5
TGTTTCATTGTGAGCACAGTCAATGCTTTGCAGACGCCAATGATCAATGCAAGTATGgtaggattcttgtttttgcatttggtgtctactcgtgttaccctttattttattttttcttatgtcttcaaggacag
||||| || ||||||||||| |||||||||||||| |||||||||||||| || |||||| | || |  ||      | |  | |||| |  | ||  | |   |||  |    |||| | ||||| ||     
TGTTTTATAGTGAGCACAGTTAATGCTTTGCAGACACCAATGATCAATGCGAGCATGgtaagcttttaattgccttttgttctctctatttttatt-tcttagctttcctgaaatcttgtttcttccag-----