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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACGGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTTCTCCGGTGAATCATCGTTTGCGCGTTCTAATCAGgtaacctttttgtgttctcatcagcaaattttcacctatttttgattaatcaaagctcagtgacatttcgatttacatgtctag

Basic information

species Arabidopsis thaliana
transcript AT1G04830.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04830.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
GATACGGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTTCTCCGGTGAATCATCGTTTGCGCGTTCTAATCAGgtaacctttttgtgttctcatcagcaaatttt---cacctatttttgattaatcaaagctcagtgacatttcgatttacatgtctag
|| || |||| |||||| ||||| ||| ||||||||||||| || |||||||||||   ||| ||||| || ||  |  | | |||     | |||||||||   | ||  |  |     ||  | | ||    ||   ||     |||   | ||  | | ||  ||   |  || ||       
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgta-tgtgttgttacttgaggcatgagacttgatacaaacatcacccatttgaccaaattaaatgg-atcctgtatttcag------