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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGATCATGAGGTGCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCTgtaagcgccaagcaatattcttttgtctttttcctcttctactttttcatataattaactccgtccctcttcctccttcactaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G04140.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 5
CACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGATCATGAGGTGCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCTgtaagcgccaag--caatattcttttgtctttttcctct------tctactttttcatataattaactccgtcc----ctcttcctccttcactaaacag-----------------------------
|||||    ||  | |||||| |||| ||||| |||||||||||||| || ||  ||||| ||||||| |||| |||||||||  || ||| ||||||||||||   | |    || | |  ||  |  |  ||  |        || |      || | |   ||   |   |    |  ||  |  | |  ||    |                             
CACCCAGTGCATCCTGAAATACTTGCAAGTGGGAGTTTAGATCATGAAGTTCGTATATGGGATGCAAATACTGCGGAGTGTATAGGATCTCGTGATTTCTgtaatttctattttcattctcattccggttgctttgttgatgcaatccagacacacacaaacacaaacacacactaagcatttagttatgccttatgtggtgaatttgatctctatctgttttcaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443186|gb|EG485778.1|EG485778
EST:     CGCTTATGGAATGCAAAA-CTGGGGGAGTGTATCAGAACTCATGATTTCT                         ATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTG
genomic: CGCTTATGGAATGCAAAAACTGGGG-AGTGTATCAGAACTCATGATTTCTgtaagcgcca ... cactaaacagATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTG
EST: gi|86085412|gb|DR381171.1|DR381171
EST:     GCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCT                         ATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTG
genomic: GCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCTgtaagcgcca ... cactaaacagATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTG