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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctcttatcatcagctttgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G03370.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os06g19400.1 (Oryza sativa), 5'ss of exon 5
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctcttatcatcagctttgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag
 || ||||| ||||| || |||||| |||||  | | |||| ||||||||||||||||||||| ||||| |||||  ||||||| |||||||     |||||||   | | || |  ||   ||||      |    |      |  |  ||||| | ||  | ||   ||||||   |  |      | |||        |                     
ACACACAAACTCAGCATTCCAGAAGATCTTTTCTTTGCCACCAGAAGAATTTCTAATCAATGATTTTACCTGTCATCTAAAGCGCAAAATGCTCACACAGgtaaactgtcttttaattatgacacagagagctaacaaaggtgtccaacactcttgt-attggttta--tccttatttagttttcttctttattgtggggatg--------------------

upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g10630.1 (Oryza sativa), 5'ss of exon 5
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctcttatcatcagctttgttccttagaaatatag-agagtatataacacatgtaattaagttttacttatgcag
||| ||||||||||| || |  ||||||||| |||| || | |||||||||||| ||| |||| || || ||| |  ||||||||||||||||  | |||||||  ||  ||        || |  | || |  ||| || | | | ||| |  | | |      || || | | ||| ||| | |   || | | |||   | |||    | | ||       
TCAGACAAATTCAGCGTTCCGTAAGCTCTTTAGTCTTCCTCCAGAAGAATTTCTTATCGATGATTTCACTTGTTATCTAAAGCGGAAAATGCCACTTCAGgtaattagggcta-------attatttgttctgatgtgttgagctggatttt--tgttac-----ttattacatggaa-tatggtatgctagacagcactgctgatt----tctgctgt-----

upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G005195_T02 (Zea mays), 5'ss of exon 5
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctcttatcatcagctttgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag
||| ||||| | ||| || |||||  |||||  | | |||| |||||||||||| |||||||| ||||| |||||||||||| |||||||||     |||||||     | ||    |   |  |||||| |  |   ||  | |||||  |  | |     | |  |   || |  | |  | |     |  |||||   |  |                  
TCACACAAACTTAGCATTCCAGAAAATCTTTTCTTTGCCACCAGAAGAATTTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAGgtaaatgttcattacacttatttgcattttgtgcttcgttttatcgcataataatgt----gggtgagcctctaaccagttcataatactt-caacacccttgtt------------------

upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G027665_T01 (Zea mays), 5'ss of exon 5
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctcttatcatcagctttgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag
 || ||||| | ||| || |||||  | |||  | | |||| |||||||||||| |||||| | ||||| |||||||||||| |||||||||     |||||||  | || || | ||  ||    ||   ||||||  |        || || ||| ||  |  | |  ||| |||    |  | | | |  | |||   |  |                  
ACACACAAACTTAGCATTCCAGAAAATATTTTCTTTGCCACCAGAAGAATTTCTTATCAATTATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAGgtaaatatccgtt-acgtttat----ttgccttttgtgcttcttttt-ttatcgtataatgtgggt-gagcctcagatcagttcataatcttcagcacccttgttct----------------

upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G39920.1 (Glycine max), 5'ss of exon 6
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctc--ttatcatcagctt-tgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag
||||||||||||||| |||||||| |||||||| || ||||  || |||||||| ||||||||||| || ||||| || ||  | ||||||||  |||||||   |      || | |        ||        |  ||||   |  | |   || | |   |||  |||| |||    || |    | ||  |  |   ||  | |   | ||  |       
TCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAAGAAAAATGCCCCTGCAGgtgtggttggtctgttatgtg--gttttgaaagccatggtcaagtactattttgattttaactggctcatgtttcttttgtattttctcattaagttgc---tgccaattgttcttggtag-----

upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G00850.1 (Glycine max), 5'ss of exon 7
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgta--acgagcccttgatgta-catcacatttttttttgtattcaaccgc-attctcttatcatcagctttgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag
||||||||||||||| |||||||| |||||||| || ||||  || |||||||| ||||||||||| || ||||| || ||  | ||||||||  |||||||       | |  ||||||    | | |       |    ||| |     ||| |       |||  ||| ||   ||  |    |   |||   |  ||  |||  ||                 
TCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAAGAAAAATGCCCCTGCAGgtgtggttggtctgtgatgtggttttaaagccacggtcaagttctattttgattttaactggctcatgtttcttttgtattatctcattaagttgctgccaattgttcttggtag------------

upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G01830.1 (Glycine max), 5'ss of exon 5
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctcttatcatcagctttgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag
||||||||||||||| |||||||| || ||||| || ||||  || |||||||| |||||||| || || ||||| || ||  | ||||||||  |||||||   |      || | |     |  ||    ||  |  ||||    |||||  | |  |      || | | |     | |    |   | | | | |  |   | | | || ||  |||||
TCAAACAAATTCAGCATTTCAGAAACTGTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGATTTCACCTGTCATTTGAAAAGAAAAATGCCCCTGCAGgtgtggttattctgttatgtg--atgttgaaattcatggtcaatt--attctactttggtttttactggtgcatgcttcttttagtatcttctcataaaattg--tgaatatttctc-tgcag

upper sequence: AT1G03370.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0194g00100.t01 (Vitis vinifera), 5'ss of exon 5
TCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGCGGAAAATGCCTTTGCAGgtaacgagcccttgatgtacatcacatttttttttgtattcaaccgcattctcttatcatcagctttgttccttagaaatatagagagtatataacacatgtaattaagttttacttatgcag
|||||||||||| || |||||||| |||||||| || |||| ||| |||||||| |||||||| ||||| |||||||| || || ||||||||  |||||||   |     || || || ||   ||  | | || ||||  |    || |||  |     ||||||| || |     || ||   | |  ||     || | || ||  |||          
TCAAACAAATTCGGCATTTCAGAAACTCTTTGGACTTCCACCAGAGGAATTTCTCATCAATGATTTTACTTGTCACTTGAAACGCAAAATGCCCATGCAGgtgttg----tttcattta-atgttatgctatcttatattgga----atgctcaaaatgggagctttgctctt-----atttaacaatttaattctcaatatgatgaaactttt---------