Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGAgtaagttagagtttaaagcaacatctaatctgatcccaaatattctgtttgcattcttaatgtttggtttctacgatatttatcagagtgttgtttacaaaatggaagattgtaaacaaagctgagagtattgaacagttccattaacattatcttaaaccttaatag

Basic information

species Arabidopsis thaliana
transcript AT1G03110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G131998_T02 (Zea mays), 5'ss of exon 6
GTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGAgtaagtt-agagtttaaagcaacatctaatctgatcccaaatattctgtttgcattcttaatgtttggtttctacgatatttatcagagtgttgtttacaaaatggaagattgtaaacaaagctgagagtattg--aacagttccattaacattatcttaaaccttaatag
|| ||  | || || ||||| |||||| ||||||| |||||||||||||| ||||| ||||| ||| ||||||| |||  | ||  || || |    | | | | |    |||  | | |||   |||||     ||  | | ||  | | || |  |  |  || ||   |  ||  | |       || |||| ||  ||| |   ||| ||   |     |  ||||  |         
GTCACATTATTCCCAAAGAATCCTCTAAAAGGGGCCCATGAAATACAGAGCTTTTGCCTTGGGCATACAGAgtatgtttggtgtacaatgctattgttga-cagttttttaattctgtttttaggttctt-----ttaatgtatataacaatt-tgggtttactggttgggatctgtcataggagtttcagagcttagtctatggttgacaattggttgtgactcttcttgcag--------

upper sequence: AT1G03110.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0151g00790.t01 (Vitis vinifera), 5'ss of exon 5
GTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGAgtaagttagagtttaaagcaacat--ctaatctgatcccaaatat-tctgtttgcattcttaatgtttggtttctacgatatttatcagagtgt-tgtttacaaa-atggaagattgtaaacaaagctgagagtattgaacagttccattaacattatcttaaacc--ttaatag--------------
||  | || || |||||||||||  |||| || |||||||| || ||||||||||||||||| ||  |||||| ||  ||  ||||    |   |  ||  | | |    | |  | | | |   ||  |  |     |     |    | |  | ||    ||| |||  |   |     | |  |    |||||  ||  | |     |        | || |||   ||| | |  ||   |               
GTTTCCGTGTTCCCCAAGAAGCCCTTAGATGGAGCTCATGAGATCCAGAGTTTTTGTCTTGGTCACACAGAgtgagcaagtttttatgagattgttccttttttaacatgacacgtgtgtatgcacacccacaccacatatacacacacacacgtgtccccatgtgtgtgcatgcacgcatatgtatacgtacaaacttggtatttgcccattacctggtgaaaattgatttacatccattgtcatgaatgtgttggcag