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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAGgttagactagagagagatacttcattaaaaaaagaacagaactttggtaatggtttttcttgcactgacttgtggtgtaaaaactttcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G03040.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436446|gb|EG479038.1|EG479038
EST:     GTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAG                         GATGAGACGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGG
genomic: GTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAGgttagactag ... ctttcttcagGATGAGACGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGG
EST: gi|86076223|gb|DR371980.1|DR371980
EST:     CACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAG                         GATGAGACGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGG
genomic: CACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAGgttagactag ... ctttcttcagGATGAGACGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGG
EST: gi|116436445|gb|EG479037.1|EG479037
EST:     GTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAG                         GATGAGACGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGG
genomic: GTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAGgttagactag ... ctttcttcagGATGAGACGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGG