Sequence
atgc intronic sequence ATGC exonic sequenceGGCTCAATTCCATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGCAGAGGGAAGCCGCAGCCTGCATTTGAACAGgtttccttgcatataagatatataaaccaatttgaagtgttttttctcaactgtttattaatatgagaatgtgtcattgcatttgttgag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G02690.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G02690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 5
GGCTCAATTCCATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGCAGAGGGAAGCCGCAGCCTGCATTTGAACAGgtttccttgcatataagatatataaac-caatttgaagtgttttttctcaactgtttattaatatgagaatgtgtcattgcatttgttgag
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AGCACAGTTGAATGAGCACACTAAACTCTCTATGCTAAGGAATGCAACTTGGACTTTATCGAACTTCTGCAGAGGAAAACCACAGCCATCATTTGAACAGgttt----ggacaaagtttctttgtactctactgtagttagtagggaaagacagttccttaacatga---tgt-ttattgggtgtcaatag
upper sequence: AT1G02690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 5
GGCTCAATTCCATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGCAGAGGGAAGCCGCAGCCTGCATTTGAACAGgtttccttgcatataagatatataaaccaatttgaagtgttttttctcaactgt--ttattaatatgagaatgtgtcattgcatttgttgag-
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AGCCCAGTTGAATGAGCATGTTAAGCTCTCCATGCTGCGGAATGCCACCTGGACTTTGTCTAACTTCTGCAGGGGAAAACCACAGCCATCATTTGATCAGgtttt-----aaacaagacttct--------tttaactgcttttctgtaactgtggtaactaac-taaacatgtttatctttggctgttatag
upper sequence: AT1G02690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 5
GGCTCAATTCCATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGCAGAGGGAAGCCGCAGCCTGCATTTGAACAGgtttccttgcatataagatatataaaccaatttgaag--tgttttttctcaactgtt---tattaatatgagaatgtgtcattgcatttgttgag---
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GGCTCAATTCAATGAGCATGCAAAACTTTCTATGTTGAGAAATGCAACATGGACATTGTCAAATTTCTGCAGGGGCAAGCCACAGCCTCAATTTGAGCAGgtt---agactcttaagatgctctattgggtttgaatgctagtttttttaaactgacagatcttgctaagtttctgatgtattcaatttattgagtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86068466|gb|DR364223.1|DR364223EST: GGACATTATCAAATTTCTGCAGAGGGAAGCCGCAGCCTGCATTTG-A-A- CAGACAAAAGCAGCTTTACCAGCTCTTGAGCGCCTTCTGCATTCAACCGAC
genomic: GGACATTATCAAATTTCTGCAGAGGGAAGCCGCAGCCTGCATTTGAACAGgtttccttgc ... atttgttgagCAGACAAAAGCAGCTTTACCAGCTCTTGAGCGCCTTCTGCATTCAACCGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTCAATTCCATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGCAGAGGGAAGCCGCAGCCTGCATTTGAACAGgtttccttgcatataagatatataaaccaatttgaagtgttttttctcaactgtttattaatatgagaatgtgtcattgcatttgttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG