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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcactgccattgaattgtctcttacttctggttcaaatgcaataccgcataatgtaataatttcgacatgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G01820.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01820.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 5
GACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgtt--------------cactgccattgaa-ttgtct---cttacttctggttcaaatgcaataccgcataatgtaata----atttcgacatgtttag---------------------
 |||||||||| ||||||    ||||  | ||||| |||||||||||||||||||| ||  ||||| || ||||||||||||| ||||              | |  | ||| || |||| |   || | || |    |  ||    |  |  |   | | |||    |||| ||  ||||                        
AACAAAGAACGAGCTGAGCAAATTGGCAGGATATCTCTTTTCTGTTGGATGGGTTCATCAATTTGCGCAACCTTGGTTGAGgtttgttgttttcaaacttttctcaacaattaaacttgtgtatgctaatttttctccctgatttcttttcctagtttttgatattttattttgatgtgttccccctcccccctctttatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164017736|gb|ES085391.1|ES085391
EST:     TTTGCACANCCTTGGTTGAG                         GTTGGGGAGGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGA
genomic: TTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGA-GCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGA
EST: gi|164126170|gb|ES186468.1|ES186468
EST:     TATCACTTTTCTGTTGGATGGGTTCTTC-GTTTGCACATCCTTGGTTGAG                         GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
EST: gi|164180632|gb|ES012098.1|ES012098
EST:     ATCACTTTTCTGTTGGATGGGTTCTTTCGGTTTGCACATCCTTGGTTGAG                         GTTGGGGAGCTTGGTAGGCTGTCAGC
genomic: ATCACTTTTCTGTTGGATGGGTTCTT-CGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGC
EST: gi|125166579|gb|EL192309.1|EL192309
EST:     TATCACTTTTCTGTTTGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG                         GGTTGGGGAGCTTG
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagG-TTGGGGAGCTTG
EST: gi|164079533|gb|ES202106.1|ES202106
EST:     GTTGGATGGGGTTCTTCGGTTTTGCACATCCTTGGTTGAG                         GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
genomic: GTTGGAT-GGGTTCTTCGG-TTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
EST: gi|164009723|gb|ES007907.1|ES007907
EST:     TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG                         GTTGGGGAGCTTGGTAGGCTGTCAGC
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGC
EST: gi|86078612|gb|DR374369.1|DR374369
EST:     TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG                         GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
EST: gi|86081227|gb|DR376984.1|DR376984
EST:     TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG                         GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAWAAAGAG
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG