1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGTTAAACGAGAAGAGTGATATCTATAGCTTCGGAATACTAATCATGGAGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGgtatttgataagcatattcaatcctctctatgtttttgtaaatggtcttactatgtgtcgtggctgtag
species | Arabidopsis thaliana |
transcript | AT1G01540.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAG ACAAATCTAGTGGATTGGCTTAAATCAATGGTGGGAAACCGAAGATCAGAAEST: gi|125033631|gb|EL105900.1|EL105900
genomic: AGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGgtatttgata ... gtggctgtagACAAATCTAGTGGATTGGCTTAAATCAATGGTGGGAAACCGAAGATCAGAA
EST: AGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGGG ACAAATCTAGTGGATTGGCTTAAATACAATGGTGGGAAACCGAAGATCAGA
genomic: AGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGgtatttgata ... gtggctgtagACAAATCTAGTGGATTGGCTTAAAT-CAATGGTGGGAAACCGAAGATCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTTAAACGAGAAGAGTGATATCTATAGCTTCGGAATACTAATCATGGAGATAATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGgtatttgataagcatattcaatcctctctatgtttttgtaaatggtcttactatgtgtcgtggctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA