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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatgatagtggagattccagcatgttcaacatattttaaagaaaatatattccttgtaggctgaattatcgtgttcattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G02080.2
intron # 45
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02080.2 (Arabidopsis thaliana), 5'ss of exon 45
lower sequence: GLYMA03G27260.1 (Glycine max), 5'ss of exon 30
TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatgatagtggagattccagcatgttcaacatattttaaagaaaatatattccttgtaggctgaattatcgtgttcattgcag---------
|||||| |||||||||||||||||||| ||| ||||||| || || ||| | | ||| || |  |||||||| || || || ||||| || || || |||||   |||   |  |    |       | |||      |  |||| ||  ||  | |    ||||  |||  |  |    | |||             
TGATGTTATTCCTTCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATGTCCGCGTAGTATGAGGCTGCCAGACCCATCTACTCCTAAATTGAAGgtcttagaatctcttacctacctttaaacgtttgtttaagattaaggagcattaagttgacgtag-ttgatgtgacagccttattcttctgtacacag

upper sequence: AT1G02080.2 (Arabidopsis thaliana), 5'ss of exon 45
lower sequence: GLYMA07G14770.1 (Glycine max), 5'ss of exon 47
TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgt---acgagatgatagt--ggagattccagcatgttcaacatattttaaagaaaatatattccttgtaggctgaattatcgtgttcattgcag
|||||| |||||| ||||||||||||| ||| ||||||| || || ||| | |||||||| |  |||||||| || ||||| ||||| || ||| | |||||   |  |  | ||| |       ||     ||| | ||      |||| |      || |   | | | |||  || |  |  |   |||||
TGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCACGTAGTATGAGGCTGCCAGATCCATCTACTCCTAATCTGAAGgtcttataatctcatacttttatcgttttgttatggttaaggagcattaa-gttggcgtagttgatat-gactgccttgtgcttctttatgcag

upper sequence: AT1G02080.2 (Arabidopsis thaliana), 5'ss of exon 45
lower sequence: Vv00s0144g00010.t01 (Vitis vinifera), 5'ss of exon 18
TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatgatagtggagattccagcatgttcaacatattttaaagaaaatatattccttgtaggctgaattatcgtgttc-attgcag
|||||||||||||||||| ||||| || ||||| ||| | ||||||||| | || ||||| || |||||||| |||||||||||||| || || ||||||||         |  |         |  || ||    || |   ||   |  | | |   |  | |  |   |       |||  || |||
TGATGTGATTCCTTCAAGCTGCATCCAGATGCGAAATGTCATCCTCAGTGCATTCCCACGTAATATGAGGCTGCCTGATCCTTCTACTCCCAACTTAAAGgtgttgatcattttttttctcattaaaatcttagctatgt---aatttatttttgtctttaatggtgtacttcggaactttccgtttcag

upper sequence: AT1G02080.2 (Arabidopsis thaliana), 5'ss of exon 45
lower sequence: Vv15s0021g02610.t01 (Vitis vinifera), 5'ss of exon 14
TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatgatagtggagattccagcatgttcaacatatt--ttaaagaaaatatattccttgtaggctgaattatcgtgttcat---tgcag
||||||||| ||| |||| |||||||| ||||| || |||||||| ||| | ||||| || || ||||||||||| ||||| ||||| || |||||||||||     || || ||  |   |    ||||       || |  | ||||  |||  ||     | || ||   || | || || ||   |||||
TGATGTGATCCCTCCAAGCTGCATACAGATGCGAAACATTATCCTTAGTGCATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGgtgtcccataatcgtaaatgattatccatgagatgtttagtgatcaaagctaat-cataaaaggaagtcttcctttttgt-tttatgcatgcag

upper sequence: AT1G02080.2 (Arabidopsis thaliana), 5'ss of exon 45
lower sequence: PP1S85_31V6.1 (Physcomitrella patens), 5'ss of exon 46
TGATGTGATTCCTTCAAGTTGCATACAAATGCGGAATATTATCCTCAGTTCTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatg-atagtggagattccagcatgttcaacatattttaaagaaaatatattccttgtaggctgaattatcgtgttcattgcag---------------------------------------------------------
||||||||||||  ||   || || || ||||| ||| | || || ||  |||||||||| |||||| | ||||||||||||| ||| || ||||| ||||||  | ||  ||| |    |       |  ||  | |||   ||   |   | |     ||  |     || |||    ||  | || |                                                         
TGATGTGATTCCCCCATCCTGTATTCAGATGCGCAATCTAATTCTTAGCGCTTTTCCACGCAACATGCGACTTCCTGATCCTTTTACACCTAATTTGAAGgtagcatattcatattttcaaccttcaaactttgcagatagcctatcaattttgttcatttttaaaaagtaaatatttcctttgtggctgttatatgtaaattggaaggcacaaaagtcagctatctaaggcgtggtgtttaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125081364|gb|EL142615.1|EL142615
EST:     TCTACCCCAAATTTAAAG                         ATTGATTTGTTACCTGAGATAGTAGAAGCTCCCTGTATCCTTTCTGAGGTT
genomic: TCTACCCCAAATTTAAAGgtacgagatg ... ttcattgcagATTGATTTGTTACCTGAGATAGTAGAAGCTCCCTGTATCCTTTCTGAGGTT
EST: gi|116449492|gb|EG492084.1|EG492084
EST:     CTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAG                         ATTGATTTGTTACCTGAGATAGTAGAAGCTCCCTGTATCCTTTCTGAGGTT
genomic: CTTTTCCACGGAACATGAGGCTTCCTGATCCTTCTACCCCAAATTTAAAGgtacgagatg ... ttcattgcagATTGATTTGTTACCTGAGATAGTAGAAGCTCCCTGTATCCTTTCTGAGGTT