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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaaatctctcttgaaattagttttcgtactatctttatttaggtttcagatgattaaaactctctgactctgattctgctttcag

Basic information

species Arabidopsis thaliana
transcript AT5G67560.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G67560.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G081622_T01 (Zea mays), 5'ss of exon 3
TGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaaatctctcttgaaattagttttcgtactatctttatttaggtttcagatgattaa-aactctctgactctgattctgctttcag----------------
| || ||||||| ||| ||||| ||| | |||||||| || || ||||| || |||||||||||||||||  | ||||||||| | ||||| || ||||||||  | |  | |     ||   |||  | | ||  ||   |     |  ||| | |  | || ||   ||  | |   | ||   |                
TTACGAAAGGAAATGTGACGATAAAGTTGTGGGATCTTGGAGGCCAACCAAGATTCCGCAGCATGTGGGAGAGATACTGCCGTGCGGTTTCTGCAATTGTgtatgtattccattc--ctaaccttc-cattttcagtaagaatagcactaatgctcaccagctgtcatgcttagttgaggtttcttgcatacatgtctattat

upper sequence: AT5G67560.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S263_59V6.1 (Physcomitrella patens), 5'ss of exon 4
TGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaaatctctct---tgaaattagttttcgtactatctttatttaggtttcagatgattaaaact--ctctgactctgattctgctttcag----------------------------------------------------------
|||| ||||| ||||| || |||||||||||||||||||||||||||||| | ||||| ||||||||||| || || || |||  |||||| |  |||||||||     | |    |  |     ||| |  || | | |        || | | | | |  | |  |||   | |    || ||   | |                                                          
TGACGAAAGGCAGTGTAACCATCAAGCTTTGGGATCTCGGTGGTCAACCTCGTTTCCGAAGCATGTGGGAGCGATATTGTCGTGGTGTTTCTGTAATTGTgtaagaacttgtatacgcgacacagttttgatctttgtctgggagaacttaaaaagttaagcagttgctcaagcaccttgtcggccgcctgagatgtgaatgtctacttacagattttaagcgttgagctgtcctggtaacttcttcag

upper sequence: AT5G67560.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S103_13V6.1 (Physcomitrella patens), 5'ss of exon 4
TGACAAAAGGAAGTGTCACGATCAAGCTTTGGGATCTCGGTGGTCAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaa--atctctcttgaaattagttttcgtactatctttatttaggtttcagatgattaaa-actctctgactctgatt--ctgctttcag------------------------------------------------------------
|||| || || ||||| || ||||| || |||||||||||||| |||||  | ||||| ||||||||||| ||||| || |||  ||| || || |||||||||  |||| | ||   |  |   ||     | |||    |  || |  | ||  | ||  | | ||| ||    |||  | |  | | |                                                            
TGACGAAGGGTAGTGTGACTATCAAACTCTGGGATCTCGGTGGCCAACCCCGATTCCGGAGCATGTGGGAGCGTTATTGTCGTGGTGTGTCTGCAATTGTgtaagaatctgtgtttccaccaaagttttggttttctgcgat--ggctctaaatattgaagcattttctcacgaccatttgcagtctcctgtggttcaaattttgaaagtatgtattttgaagcatttaggtgacctggtaactgtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079865|gb|DR375622.1|DR375622
EST:     ADGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGT                         GTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAGAGTGA
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaaatctct ... ctgctttcagGTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAGAGTGA
EST: gi|124764615|gb|EH854745.1|EH854745
EST:     GCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGT                         GTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAGAGTGA
genomic: GCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaaatctct ... ctgctttcagGTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCGAAGAGTGA
EST: gi|125145363|gb|EL180560.1|EL180560
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGT                         GTATGTAGTTGATGCTG
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaaatctct ... ctgctttcagGTATGTAGTTGATGCTG
EST: gi|125026263|gb|EL098532.1|EL098532
EST:     AGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGT                         GTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCG
genomic: AGGTTCCGCAGCATGTGGGAACGTTACTGCCGTTCTGTTTCCGCGATTGTgtaaatctct ... ctgctttcagGTATGTAGTTGATGCTGCTGATCCTGATAACCTCAGTGTCTCG