1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTACAATGCGGTGAAATTGAAGTGGAGAAGAAAATCGATGAAAAGATTGAGCAGTTCATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAGgtatatacagataacaaatgcttgatttccatttcattgacagtgaaccacatattccataccttgctcaagcaaggattgaacgtttctgcagcatatagggttgtataatgaagtaatgatctcatccttttcattgtctcatcctttgtggctgttaatgatctctttttctttttgccaag
species | Arabidopsis thaliana |
transcript | AT5G66930.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGAGCAGTTCATTAACTTGATTGAGAAACACCCAAACAAAAAGAGTCAG ATTTGTCTATCGTTCTATGAAGTCEST: gi|124827318|gb|EH912184.1|EH912184
genomic: TTGAGCAGTTCATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAGgtatatacag ... ttttgccaagATTTGTCTATCGTTCTATGAAGTC
EST: ATTGAGAAACACCCAAACAAAAAGAGTCAG ATTTTGTTCTATCGTTCTATGAAGTCAAAAGCAAACAGCCTTCTTGGTTCA
genomic: ATTGAGAAACACCCAAACAAAAAGAGTCAGgtatatacag ... ttttgccaagA-TTTG-TCTATCGTTCTATGAAGTCAAAAGCAAACAGCCTTCTTGGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAATGCGGTGAAATTGAAGTGGAGAAGAAAATCGATGAAAAGATTGAGCAGTTCATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAGgtatatacagataacaaatgcttgatttccatttcattgacagtgaaccacatattccataccttgctcaagcaaggattgaacgtttctgcagcatatagggttgtataatgaagtaatgatctcatccttttcattgtctcatcctttgtggctgttaatgatctctttttctttttgccaag
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG