Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatcaatctgtttatatatcctctgtttacatatatataatctacctacccaaggcagtgtggctgaaaattcattgagcaattctctgattgtgcatgtacag

Basic information

species Arabidopsis thaliana
transcript AT5G66850.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G06200.1 (Glycine max), 5'ss of exon 7
GAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatcaatctgtttatatatcctctgtttacatatatataatctacctacccaaggcagtgtggctgaaaattcattgagcaattctctgattgtgcatgtacag
|| || ||| |||| ||  | || ||||||||||||||||||||||||| ||||||||| | ||| || ||  |||   | |  ||      |  || | || | || ||  |        ||    | |  || | |  || ||| |   |  | | | |            
GAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATAgtaaggaag-aattcctattcatggtgattagttgcctaaa-attattcattatttatagaacttcttactaata--tctttgggttgtgttttaactag----------

upper sequence: AT5G66850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G39070.1 (Glycine max), 5'ss of exon 6
GAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatcaatc-tgtttatatatcctctgtttacatatatataatctacctacccaaggcagtgtggctgaaaattcattgagcaattctctgattgtgcatgtacag-
|| || ||| |||| ||  | || |||||||||||||| |||||||||| ||||||||| | ||| || ||  | || | || ||  ||    ||| ||     | || | | |  || | |  | | ||      ||    | ||     ||  |  | |||||  |  ||   
GAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATCGTGCAGTATTATGGTAGCGAAATAgtaaggaagaattcctattcatg-attagttgtcta-----agattaaccat-tatctatagaactgcccacaaattaaccttctaatatctttgggttgtgttttgactag

upper sequence: AT5G66850.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 3
GAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatcaatctgt---ttata-tatcctctgtttacatatatataatctacctacccaaggcagtgtggctgaaaattcattgagcaattctctgattgtgcatgtacag
|| || ||| |||| ||  | ||  | ||||||||||||||||||||||||||||| || ||||||||| ||| |  ||    ||||  ||| |    || |||| | | |  | ||  |  |||  | |   |  ||||   || ||    ||||| | ||  | ||||       
GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtgatccagttgcagattatggtattcatgcttaacatttgtcttgt-tagatttccatagtaacttaactga---ttaatatctcaattttatgcctatgcag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831783|gb|CK121467.1|CK121467
EST:     TAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACA                         GTAGAAGATCGTTTCTTTATATACCTGGAATATGTTCACCCGGGTTCAATA
genomic: TAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatc ... gcatgtacagGTAGAAGATCGTTTCTTTATATACCTGGAATATGTTCACCCGGGTTCAATA
EST: gi|86058391|gb|DR354148.1|DR354148
EST:     TAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGTGAGACA                         GTAGAAGATCGTTTCTTTATATACCTGGAATATGTTCACCCGGGTTCAATA
genomic: TAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatc ... gcatgtacagGTAGAAGATCGTTTCTTTATATACCTGGAATATGTTCACCCGGGTTCAATA