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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCAGTTTAAGGTTCGTTGTGCATTAGAGAAAGCCTTAGGTTATCGAACAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttacttacatttcccaaaactgagttgtttagaaatgagctttgtgcattataaggaattgccatcttggttttgatttcatcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G66600.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429915|gb|EG472507.1|EG472507
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429913|gb|EG472505.1|EG472505
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429900|gb|EG472492.1|EG472492
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429923|gb|EG472515.1|EG472515
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429925|gb|EG472517.1|EG472517
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429918|gb|EG472510.1|EG472510
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429924|gb|EG472516.1|EG472516
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429922|gb|EG472514.1|EG472514
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429914|gb|EG472506.1|EG472506
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAG
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAG
EST: gi|116429904|gb|EG472496.1|EG472496
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429902|gb|EG472494.1|EG472494
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429907|gb|EG472499.1|EG472499
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
EST: gi|116429909|gb|EG472501.1|EG472501
EST:     CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAG                         CCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA
genomic: CAGCATCTTCTTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGgtcagttact ... tcatcttcagCCAGCTACTGATTTAATCAAAGACGTTGCGGTGCTCGAAATGGAAGTTATA