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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcatatattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G65930.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 6
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcata-tattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag
    | || || |  |||||||| ||| | | ||| |||||||| |||||||||||||||||||||||| | || ||||||||| ||||| | || ||||| |||   |  |   |||   ||| |  || |||  | || |      | || |                              
----TTGCAGGGATCATTAAACTGTCAACATACTCAAGCTTTAGCTTGTTTGAATGTCGTAAAGTTGTTACCAGCTCTAAATCACCTGATTCTGGGAATGGCATgtccttttcc-actcctttcttgttaatatcattaacttgc-tgagatgag-----------------------------

upper sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 9
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcatatattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag
    | || ||    |||||||| ||| ||| ||| ||||||||| | ||||||||||||||||||||| |  | || ||| || ||||||  || ||||| |||  ||  |    ||  | | ||  | | || |    ||||  |                                    
----TTGCAGGGCTCATTAAACTGTCAACTTACTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctct--ccttgtttt-tgttatattataatcaag-----------------------------------

upper sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 7
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatg--ctttcatatgactggcttcgtcatatattgtgaagtaatacaac--attatcgatcatttttctatctgtgcacttgcag---
|| || || || |  |||||||| ||| | | ||| |||||||| |||||||||||||||||||||||| |  |  | |||||| ||||| | || ||||| |||  ||||   |   || ||||  | ||||  | | |  |  |   |    |  || | ||  | | | | |||  |||   ||   
GAACTTGCAGGGATCATTAAACTGTCAACATACTCAAGCTTTAGCTTGTTTGAATGTCGTAAAGTTgttaccggcaccaaatcacctgattctgggaatggcatgtccttttccactccttgcttgttaatatcgt-taacttgctgagatgagtagtctaacagctctttttttgt-tactcagaggag

upper sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 7
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcatatattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag
    | || ||    |||||||| ||| | |  || ||||||||| | ||||||||||||||||||||| |  | || ||| || ||||||  || ||||| |||  ||  |    ||  | | ||  | | || |    |||| |||   |   | | ||  |  ||               
----TTGCAGGGCTCATTAAACTGTCATCATATTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctct--ccttgtttt-tgttatattataat-caaagctgaagttaatagtcttacag------------

upper sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 6
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctt-------tcatatgactggcttcgtcatatattgtgaagtaataca-acattatcgatcattt----ttctatctgtgcacttgcag--
|| || || |||| ||||||||| ||||| | ||||||||| |||||||||||||| || ||| || || |  ||||||||||| ||||||| || |  ||||| | |       || | ||  |   ||  |  ||| || | || | | ||  ||   ||   ||||||    | |  | | |    || ||   
GAACTTGCAGGAATAATTAAACTCTCAGCATACTCTAGCTTCAGTTTGTTTGAATGCCGGAAAATTATTACTGGTTCTAAATCACCTGATCCTGGGAGCGgtatccatcttattatcttctggattattttattttatttttttaaatcagactcactaaattagtcatttgatgtgcactttttctttttacatag