Sequence
atgc intronic sequence ATGC exonic sequenceAACGAATGGGAATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTTGAAGTGAATCCTGTGTGGCAAGATTCAAGgtaatgtttcttgaaaaattctctgctgttgaagagttgtgttgttgcctcggaagctgatgttgtgtgttttttctttctgtgtgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G65470.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G65470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G057037_T01 (Zea mays), 5'ss of exon 5
AACGAATGGGAATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTTGAAGTGAATCCTGTGTGGCAAGATTCAAGgtaa---tgtttcttgaaa----------aattctctgctgttgaag-agttgtgttgttgcctcggaagctgatgttgtgtgttttttctttctgtgtgcag
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-----------ATATGTGATGCCATTGCAGTTGCAAAGATTCTTAATGCTACTCTTGTGATCCCACATCTTGAAGTAAACCCTGTTTGGAAGGATTCAAGgtgcctctgtagtttgaaactatatattccatgttctcctgttgaggcagaaatattttttttt----atatattatactggttcattttttcctggctgcag
upper sequence: AT5G65470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G02850.1 (Glycine max), 5'ss of exon 5
AACGAATGGGAATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTTGAAGTGAATCCTGTGTGGCAAGATTCAAGgtaatgtttcttgaaaaattctctgctgttgaagagttgtgttgttgcctcggaagctgatgttgtgtgttttttctttctgtgtgcag
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-----------ATATGTGATGCAGTTGCTGTTGCAAAGATACTGAATGCTACTCTGGTGATCCCATACCTTGAACTGAATCCTGTATGGCGAGATTCAAGgtaattgac----aacaccattattatatttatttgtccgatggattgtgtgcgatgaaatgttgag-gttgcttatgtttgactgcag
upper sequence: AT5G65470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0313g00030.t01 (Vitis vinifera), 5'ss of exon 5
AACGAATGGGAATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTTGAAGTGAATCCTGTGTGGCAAGATTCAAGgtaatgtttc-ttgaaaaattctctg--ctgttgaagagttgtgttgttgcctcggaagctgatgttgtgt-gttttttctttctgtgtgcag
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-----------ATTTGTGATGCTGTTGCTGTTGCTAAGATATTAAATGCTACACTTGTGATCCCACATCTTGAAGTGAATCCTGTTTGGCGGGATTCGAGgtagttttttgttcaagcatctacttactttttcatgaaccttattagtttttagggagac-atattctgaagtggcattcttttttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164135014|gb|ES198151.1|ES198151EST: GGCAAGATTCAAG TTCTTTTGTTGATATCTTTGATGTCGATCATTTTATCGATTCTTTAAAAGA
genomic: GGCAAGATTCAAGgtaatgtttc ... ctgtgtgcagTTCTTTTGTTGATATTTTTGATGTCGATCATTTTATCGATTCTTTAAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACGAATGGGAATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTTGAAGTGAATCCTGTGTGGCAAGATTCAAGgtaatgtttcttgaaaaattctctgctgttgaagagttgtgttgttgcctcggaagctgatgttgtgtgttttttctttctgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA