Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagcttgaaccctgtttcagctgttttttttttatgctgtttgtttccaattctaagatcttgtccttgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G64130.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164220498|gb|ES039606.1|ES039606
EST:     GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAG
genomic: GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAG
EST: gi|125060096|gb|EL128773.1|EL128773
EST:     CCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
genomic: CCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
EST: gi|164236086|gb|ES158095.1|ES158095
EST:     GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCA
genomic: GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCA
EST: gi|125259127|gb|EL273212.1|EL273212
EST:     GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCA
genomic: GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCA
EST: gi|164011349|gb|ES111060.1|ES111060
EST:     GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAA-TCTCCATGTGCTCCATCTGAG
genomic: GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
EST: gi|124941928|gb|EL018239.1|EL018239
EST:     AGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
genomic: AGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
EST: gi|47828491|gb|CK118175.1|CK118175
EST:     GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
genomic: GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
EST: gi|124789979|gb|EH879658.1|EH879658
EST:     CCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
genomic: CCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAG
EST: gi|125212655|gb|EL227609.1|EL227609
EST:     GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCA
genomic: GTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCA
EST: gi|164152477|gb|ES022085.1|ES022085
EST:     TTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAG
genomic: -TGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAG
EST: gi|124999629|gb|EL071898.1|EL071898
EST:     CGAAGCCAAAGGGA-CCCTGGAAGCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCA
genomic: CGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCA
EST: gi|125000261|gb|EL072530.1|EL072530
EST:     TGTTGCGAAGCCAAAGGGACCCCTGGAAGTCCCTTCGTCCCAAGTTACAG                         CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCAT
genomic: TGTTGCGAAGCCAAAGGGACCCCTGGAAG-CCCTTCGTCCCAAGTTACAGgtaaatgagc ... tgttttgcagCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGgtaaatgagcttgaaccctgtttcagctgttttttttttatgctgtttgtttccaattctaagatcttgtccttgttttgcag

- - - - - - - - - - - - - - TGGAAG