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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACTGAAAGATTTGACAAAGTCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAGgtagttgatttaacttttgtatataaatgttttgaattctttttcatttgtatgttaaattaatttcctttctctgtgtcaatgccttttgtattcag

Basic information

species Arabidopsis thaliana
transcript AT5G63890.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068844|gb|DR364601.1|DR364601
EST:     TCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAG                         CTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACA
genomic: TCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAGgtagttgatt ... ttgtattcagCTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACA
EST: gi|86068846|gb|DR364603.1|DR364603
EST:     TCCAGCTGAATAAAGNTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAG                         CTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACAACA
genomic: TCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAGgtagttgatt ... ttgtattcagCTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACAACA
EST: gi|86068847|gb|DR364604.1|DR364604
EST:     CAGCTGGAATAAAGTTGTGGAAGATATGTCTGGAGCTTTCTGTTCCTGAG                         CTCGATTCCAATGTCAAAGAAGCGTTTGA
genomic: CAGCTG-AATAAAGTTGTGGAAGATATGTCTG-AGCTTTCTGTTCCTGAGgtagttgatt ... ttgtattcagCTCGATTCCAATGTCAAAGAAGCGTTTGA
EST: gi|86068843|gb|DR364600.1|DR364600
EST:     TCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGNTCCTGAG                         CTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACAACAT
genomic: TCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAGgtagttgatt ... ttgtattcagCTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACAACAT
EST: gi|86068845|gb|DR364602.1|DR364602
EST:     TCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAG                         CTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACAACATATAT
genomic: TCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAGgtagttgatt ... ttgtattcagCTCGATTCCAATGTCAAAGAAGCGTTTGATGTTGCGTATGACAACATATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACACTGAAAGATTTGACAAAGTCCAGCTGAATAAAGTTGTGGAAGATATGTCTGAGCTTTCTGTTCCTGAGgtagttgatttaacttttgtatataaatgttttgaattctttttcatttgtatgttaaattaatttcctttctctgtgtcaatgccttttgtattcag

- - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT