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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCTTGGTGGAATGGACAATGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCAGTGCACCTGACTATCCGCAATTCCAAgtatgtatttttacgcctttggtatttgcattttctaaagatatgcgttaacaatcatttttgtgtgtggtgtag

Basic information

species Arabidopsis thaliana
transcript AT5G63870.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63870.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os08g40200.1 (Oryza sativa), 5'ss of exon 3
TGGTCTTGGTGGAATGGACAATGGATATACAATAGACCACAATGTCGAATCCGGAAAGCTTATCACTATTTTCAGTGCACCTGACTATCCGCAATTCCAAgtatgtatttttacgcctttggtatttgcattttctaaagatatgcgttaacaatcatttttgtgtgtggtgtag--------------------------------------------------------------------------------------------------------------------------
|| ||||   ||||||||||||||||||||||| |||||  |||| ||||  |||||| | || ||| |||||||||| || || ||||| || |||||||||  |   | |    | |   | |  |       | || |||  | || |  ||        | |   || ||                                                                                                                           
TGATCTTTTAGGAATGGACAATGGATATACAATTGACCATCATGTGGAATGTGGAAAGTTAATAACTCTTTTCAGTGCTCCAGATTATCCACAGTTCCAAgtaatt--ctctgtcacatgattttccgttcaccttgaaaataatcttttattattgaaacattatactgtatatgaattccacaagtgaaaatctactcaacttttttttggggcattccatgctaaacgatttgattttatgattggttgatcatatctattgtttctcatatttgatattgtctattggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088423|gb|DR384182.1|DR384182
EST:     CCGGAAAGCTTATCACTATTTTCAGTGCACCTGACTATCCGCAATTCCAA                         GCAACAGAAGAGAGGTACAAAAACAAAGGAGCATATATTATTTTGCAGGCG
genomic: CCGGAAAGCTTATCACTATTTTCAGTGCACCTGACTATCCGCAATTCCAAgtatgtattt ... tgtggtgtagGCAACAGAAGAGAGGTACAAAAACAAAGGAGCATATATTATTTTGCAGGCG