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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCATGATGATCTATGTGAAGACTTCTTTGCTTACAACAGAGCCAAGGGAACTCTTTACGATGGCGAAACTCGTCTCTTTTTGCGACATGATGgtaaatttgaagactttttaaacatcaggtggcatattaggagaactgtgattgttttacctaattacatttcttaatttctggcag

Basic information

species Arabidopsis thaliana
transcript AT5G63620.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63620.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G00740.2 (Glycine max), 5'ss of exon 5
GGCCATGATGATCTATGTGAAGACTTCTTTGCTTACAACAGAGCCAAGGGAACTCTTTACGATGGCGAAACTCGTCTCTTTTTGCGACATGATGgtaaatttgaagactttttaaacatcaggtggcatattaggagaactgtgattgttttacctaattacatt-tcttaatttctggcag----------------
||||||||||||||||||||||  |||||||| || ||| | || || ||||| || || ||||| |||||||| |||||||| ||| |   |||| | | |||    ||    |  ||       |  | ||     | ||  | | |||  || |  |  | | ||   |  |   | ||                
GGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGgttagtatga---tttacctattatttcaaccctaactattgttattgctact-tttgccccatgtgtactatcagcagctgcagtagtgatttggatattatt

upper sequence: AT5G63620.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G33140.1 (Glycine max), 5'ss of exon 4
GGCCATGATGATCTATGTGAAGACTTCTTTGCTTACAACAGAGCCAAGGGAACTCTTTACGATGGCGAAACTCGTCTCTTTTTGCGACATGATGgtaa-----atttgaagactttttaaacatcaggtggcatattaggagaactgtgattgttttacc--taattacatttcttaatttctggcag------
||||||||||||||||||||||  |||||||| || ||| | || || ||||| || || ||||| |||||||| || ||||| ||| |   |||| |     ||||    | | ||| ||    |  |    |  ||      |  |   | |  ||||   |  | || |  | | ||              
GGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTTTTTTTTCGAAACAGTGgttagtatgatttacctattatttcaagcctaactatgttgctatatttgccctatgtctactaccagcagctgcagtagtgatttggatattatttaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502831|gb|HO208371.1|HO208371
EST:     CAAGGGAACTCTTTACGATGGCGAAACTCGTCTCTTTTTGCGACATGATG                         ATTCACCAGTGTATATGTATAGTATGGGAGGGATGGCTGAGTACTGTGTTA
genomic: CAAGGGAACTCTTTACGATGGCGAAACTCGTCTCTTTTTGCGACATGATGgtaaatttga ... tttctggcagATTCACCAGTGTATATGTATAGTATGGGAGGGATGGCTGAGTACTGTGTTA