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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGgtcagtgtgacactgtgacttggatttgtttgctcctttgattaacttacttctaactgaaatgatttctgattcgcag

Basic information

species Arabidopsis thaliana
transcript AT5G62650.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G62650.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G24090.1 (Glycine max), 5'ss of exon 4
GAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGgt-----cagtgtgacactgtgacttggatttgtttgctcctttgattaacttacttctaactgaaatgatttctgattcgcag-
|| ||||||||||| || |||||||||||||||||||  |||||      |||||  || |||  | |   || |  |  |  ||||| |  |  |  | ||  |  ||| | | |     | |   
GAAAAACCTCACTTGTTCCAGTTTGTTCCAAATGAGAAGCAGgtattattagtgtttcattgttgcatatcttcgagt-tttatttgactgcc--atctgtatttataataaatacatccccaccag

upper sequence: AT5G62650.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G29580.1 (Glycine max), 5'ss of exon 4
GAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGgtcagtgtgacactgtgacttggatttgtttgctcctt-tgattaacttacttctaactga-aatgatttctgattcgcag-
|| ||||||||||| || |||||||||||||||||||  ||||| | | | |   | | | |      | | | ||  || |  || |||  ||||| | | | ||| | | ||    |||   
GAAAAACCTCACTTGTTCCAGTTTGTTCCAAATGAGAAGCAGgt-attattagtttttcattgttgcatatcttctggttgtatttgactgccttcttatttataataaatactttcccgccag

upper sequence: AT5G62650.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv16s0050g01470.t01 (Vitis vinifera), 5'ss of exon 4
GAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGgtcagtgtgacactgtgacttggatttgtttgctc-ctttgattaacttacttctaactgaaatgatttctgattcgcag
|| |||||||||||||| | ||||||||||||||||| |||||| | ||  | | |||  ||     |||| |  |  | ||| || | |   || |  ||                     
GAAAAACCTCACTTATTCCGGTTTGTTCCAAATGAGAAACAGgtaaatggta-attgtccctgcttgttgtatattagcattggttcaatattttgttgctcttgcag--------------