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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTTGTGGACAGCTTATCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAGgtatgatttggttgaggtttggtgctatttcttcttgttttgtcatttcccattttgtttcatatatgaaggatagtaatggtcttgttttctacag

Basic information

species Arabidopsis thaliana
transcript AT5G62530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G62530.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 4
CCATTTGTGGACAGCTTATCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAGgt-----atgatttggttgaggtttggtgctatttcttcttgttttg--tcatttcccattttgtttcatatatgaaggatagtaatggtcttgttttctacag--------------------------------------------------------------------
||||||||||||||||| ||| ||||||| ||||||||||| ||||| || || ||| | || || ||||     | |  |    |    | |    ||| |||| ||||| ||   | | ||  | |||||  |  |   |   |||| || |  |     | ||                                                                          
CCATTTGTGGACAGCTTGTCCAAGTGCCCCAAACATGGTCTACATAATCCATTTAAAGCACCTGAAAGgttgtacacgcgtcttcttcaatcttactctaattctacttgtcttcgcttacttttctttttgacttgttggtactggattgttacaggtacatattagttgagaatatcattgttactgttcagttgtgcaactgtactagaagataaacatactcattgtgtctctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164068687|gb|ES210798.1|ES210798
EST:     TCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAG                         ATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCT
genomic: TCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAGgtatgatttg ... ttttctacagATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCT
EST: gi|86069296|gb|DR365053.1|DR365053
EST:     TCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAG                         ATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTT
genomic: TCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAGgtatgatttg ... ttttctacagATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTT
EST: gi|86069297|gb|DR365054.1|DR365054
EST:     TCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAG                         ATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTT
genomic: TCCCAGTGCCCGAAACATGGTCTCCATAACCCTTTCAAATCTCCAGAGAGgtatgatttg ... ttttctacagATACCTTTTATATGGAGATATCTCGACAAAGGCAGCTCATATGCTCGCCTT