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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgtttctcttatggattttgaatttgctgattctagttatctttatacaattatactgatagctttcaatgagtcattgttttttcctttaag

Basic information

species Arabidopsis thaliana
transcript AT5G62240.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430574|gb|EG473166.1|EG473166
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430576|gb|EG473168.1|EG473168
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430569|gb|EG473161.1|EG473161
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430567|gb|EG473159.1|EG473159
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430565|gb|EG473157.1|EG473157
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430571|gb|EG473163.1|EG473163
EST:     CCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430578|gb|EG473170.1|EG473170
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430582|gb|EG473174.1|EG473174
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430585|gb|EG473177.1|EG473177
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
EST: gi|116430580|gb|EG473172.1|EG473172
EST:     TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAG                         GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT
genomic: TCTCTAAGTTACAAAACCAAGACACCAATAGGCAAAAACAGGAAGCTAAGgtgtgtgttt ... ttcctttaagGTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAAT