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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCGAGAAAGGAAAGAATCTGTGACTGTTCTACTGTGCGGTACTAGTGGCTGTGGCAAATCTACACTCTCCGCACTTCTGgtatttttcatcacatgtattataatcgttttagattgacataagatgatgcttcactgttttgttttgttatattcaatatttggttaggtactgtttcacttcttttttccacaggctttacaatactggattctgttttccttacag

Basic information

species Arabidopsis thaliana
transcript AT5G60760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60760.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv08s0040g01610.t01 (Vitis vinifera), 5'ss of exon 3
AATCCGAGAAAGGAAAGAATCTGTGACTGTTCTACTGTGCGGTACTAGTGGCTGTGGCAAATCTACACTCTCCGCACTTCTGgtatttttcatcacatgtattataatcgttttagattgacataagatgatgcttcactgttttgttttgttatattcaatatttggttaggtactgtttcacttcttttttccacaggctttacaatactggattctgttttccttacag
 |||||||||||| | || ||||| |||||| || | ||||| || ||||| ||||||||||||||  | ||| || | |||||| ||    ||||    |  |||    || |    |  |||||  ||| | ||   || |||   |  ||||  |      |||| |   ||   | |   || |||| |  | |                                  
GATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTGgtacttact-tcac---caccatagattttct----ttccataat-tgaag-tttgttggttttcctcattatccttgcc-cttggct---tatcatct---ttgttttattgagaa---------------------------------