1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTTTTCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaatggttttagtaggattttttgttttaaattcgaagatggtgtaggtccgtttactaacatgaaagtatatgttctcattttgcag
species | Arabidopsis thaliana |
transcript | AT5G60640.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAG TTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCEST: gi|86064531|gb|DR360288.1|DR360288
genomic: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaat ... cattttgcagTTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTC
EST: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAG TTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTTEST: gi|164039912|gb|ES199617.1|ES199617
genomic: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaat ... cattttgcagTTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTT
EST: GAGAGTGCAATCAAGAAACAG TTGTTGTTGTTTGTAACCAAAAAATGAATCTGAAAAGGTTCTTACGGAATTEST: gi|125041641|gb|EL113910.1|EL113910
genomic: GAGAGTGCAATCAAGAAACAGgtctgtcaat ... cattttgcagTTGTTGTTGTTTGTAACC-AAAAATGAATCTGAAAAGGTTCTTACGGAATT
EST: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAG TTGTTGTTGTTTGTAACCAAAAATGAATCTGTAAAAGGTTCTTACGGEST: gi|164110532|gb|ES038247.1|ES038247
genomic: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaat ... cattttgcagTTGTTGTTGTTTGTAACCAAAAATGAATCTG-AAAAGGTTCTTACGG
EST: CTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAG TTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTTEST: gi|86064530|gb|DR360287.1|DR360287
genomic: CTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaat ... cattttgcagTTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTT
EST: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAG TTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTTEST: gi|164001818|gb|ES205866.1|ES205866
genomic: TCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaat ... cattttgcagTTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTT
EST: GAGAGACTGCNCCGGAAATTTTTGAGAGTGCAATCAAGAAACAG TTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTT
genomic: GAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaat ... cattttgcagTTGTTGTTGTTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTTTTCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGgtctgtcaatggttttagtaggattttttgttttaaattcgaagatggtgtaggtccgtttactaacatgaaagtatatgttctcattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA