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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtgggaatcttatttactcaatactatccaatcctttaagtgtatcctccataagtattccgggttttggattccataacattatgtttatcattcacaacag

Basic information

species Arabidopsis thaliana
transcript AT5G60550.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G20690.1 (Glycine max), 5'ss of exon 3
GATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtgggaatcttatt-tactcaatactatccaatcctttaagtgtatcctccataagtattccgggttttggattccataacattatgtttatcattcacaacag
|||||||||||  ||||||  || ||||||||| |||| | |||||||||||| || ||||||||||| |||||||| ||||      | ||  |||| ||     |  | | ||||   ||| ||    | ||  |||            ||||  | | |  |   |  ||| ||  ||||
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTGTAAAATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtagtattcatggtacttaac-tggttaactactttttctgtctcagtgaaaacaatt------------ttcctgagcctctttccttacatgcatgacag

upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G29640.4 (Glycine max), 5'ss of exon 2
GATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtgggaatcttatttactcaatactatccaatcct--ttaagtgtatcctccataagtattccgggttttggattccataacattatgtttatcattcacaacag
|||||||||||  ||||||  || ||||| |||||||| | || ||||||||| | ||| |||||||| |||||||||||      | ||    | | |    |     || ||  |  | |  |   |||  |    ||||  |    | ||  ||                           
GATGAAAATGGGAACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGTTGCGGAAGCTATGGCAAAGTGgtaagcatagtttttgcagaattatcttttctttattctcatggaatccactgtcctgagcccttccttgacacgcatcgcag--------------------------

upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 4
GATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtgggaatcttatttactcaatactatccaatcctttaagtgtatcctccataagtattccgggttttggattccataacattatgtttatcattcacaacag
|||||||||||  ||||||  || ||||||||| |||| | || ||| ||||| || ||||||||||| |||||||| ||||  |    |||| |    | |    |     |  |||    |   | | | ||  |      |  |    | ||| |||                      
GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtaa----tattcatggtacatatcctgtctcaataaaaacaattttcctgagcctctt---tccttacatgcatgacag---------------------

upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 4
GATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtgggaatcttatttactcaatactatccaatcctttaagtgtatc-ctccataagtattccgggttttggattccataacattatgtttatcattcacaacag
|||||||||||  | ||||| ||||||||||||||||| | ||  || ||||| || || |||||||| |||||||||||   |  |  || |  |    || | |  |||   | ||    ||   | | | ||  | | |   |    || | | |                         
GATGAAAATGGGAATAAGACGATCAATGAGTATGTTCGTGAGTACAAGATTGGTTCTGGAAGCTATGGCAAAGTGgtaagcatgg-tgctagtggcattttattctttaattgctcaaagaaatggtttctttagcttcctgtcctgcacatgcaacag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125325605|gb|EL339685.1|EL339685
EST:     ATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTG                         GTTTTATATCGAAGCACTTTAGAC
genomic: ATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtggga ... ttcacaacagGTTTTATATCGAAGCACTTTAGAC
EST: gi|164214175|gb|ES035329.1|ES035329
EST:     GTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTG                         GTTTTATATCGAAGCACTTTAGACGGCCAGTATTATGCTATCAAG
genomic: GTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtggga ... ttcacaacagGTTTTATATCGAAGCACTTTAGACGGCCAGTATTATGCTATCAAG
EST: gi|164100757|gb|ES050292.1|ES050292
EST:     GTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTG                         GTTTTATATCGAAGCACTTTAGACGGCCAGTATTATGCTATCAAG
genomic: GTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGgtaagtggga ... ttcacaacagGTTTTATATCGAAGCACTTTAGACGGCCAGTATTATGCTATCAAG