1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCTGTTCTTGATGTAGGTCCTGATGTCGAAGTCCTGGCGGATTATCCCGTCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAGgtttgcttaattttgcactaattttcatgaaacgattactcttttgtgagcacatgtatgaatcccttcttgttggtttcattttttggggataaatcag
species | Arabidopsis thaliana |
transcript | AT5G60540.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAG GAAGATGCTCTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAACEST: gi|47828146|gb|CK117830.1|CK117830
genomic: TCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAGgtttgcttaa ... gataaatcagGAAGATGCTCTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAAC
EST: TCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAG GAAGATGCTCTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAACEST: gi|125289968|gb|EL304053.1|EL304053
genomic: TCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAGgtttgcttaa ... gataaatcagGAAGATGCTCTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAAC
EST: TCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAG GAAGATGCTCTTCCTG
genomic: TCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAGgtttgcttaa ... gataaatcagGAAGATGCTCTTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGTTCTTGATGTAGGTCCTGATGTCGAAGTCCTGGCGGATTATCCCGTCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAGgtttgcttaattttgcactaattttcatgaaacgattactcttttgtgagcacatgtatgaatcccttcttgttggtttcattttttggggataaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT