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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCAATGGCCAAATCTTTGCTGAGCAGGGCAAAGCTCTGAACAAAGCTGCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAAgtaagctacattccttaattcaaccctcttcatatcgtaatcagtgacaaacattggaagtatactttacctcattttgtgttctttcag

Basic information

species Arabidopsis thaliana
transcript AT5G58330.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G33380.1 (Glycine max), 5'ss of exon 8
ACATCAATGGCCAAATCTTTGCTGAGCAGGGCAAAGCTCTGAACAAAGCTGCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAAgtaagctacattccttaattcaaccctcttcatatcgtaatcagtgacaaacattggaagtatactttacctcattttgtgttctttcag
                             || | |||| | ||    | ||| || |  || ||||| ||| | |||||||||||||||||||| || |||||||||    |  |||  | |     ||| | || | |    ||| |      || ||   |   | |  |   |||   | |      
-----------------------------GGAAGAGCTTTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttggcttttta--tgagtaaacttgaaattgcatgttgtgcctgtttatgcaaacgt---tcatgtgtatttaaatgcag----

upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G34150.2 (Glycine max), 5'ss of exon 6
ACATCAATGGCCAAATCTTTGCTGAGCAGGGCAAAGCTCTGAACAAAGCTGCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAAgtaagctacattccttaattcaaccctcttcatatcgtaatcagtgacaaacattggaagtatactttacctcattttgtgttctttcag
                             || | |||  | ||    | ||| || |  || ||||| ||| | |||||||||||||||||||| || |||||||||    |  |||  |       ||| | || | |    ||| |      ||  | | |   | |  |   |||   | |      
-----------------------------GGAAGAGCATTAAATGCCGTTGCATCCCGCAATGTCAAAGTTATAGTAGTGGGAAACCCTTGCAATACAAAgtaagcttggcttttta--tgggtaaacttgaaattgcacgttgtgcctgtttatgctaatgt---tcatgtgtatttaaatgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125266776|gb|EL280861.1|EL280861
EST:     GCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAA                         TGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAA
genomic: GCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAAgtaagctaca ... gttctttcagTGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAA
EST: gi|116454058|gb|EG496650.1|EG496650
EST:     GCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAA                         TGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAAGAACTTCCA
genomic: GCCTCTCCTAACGTCAAGGTTCTTGTAGTGGGAAACCCTTGCAACACCAAgtaagctaca ... gttctttcagTGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAAGAACTTCCA
EST: gi|164109961|gb|ES068451.1|ES068451
EST:     GGTTCTTGTAGTGGGAAACCCTTGCAACACCAA                         TGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAAGAACTTCCA
genomic: GGTTCTTGTAGTGGGAAACCCTTGCAACACCAAgtaagctaca ... gttctttcagTGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAAGAACTTCCA