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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGGgtaagctgcttgctaaaaccattcaccattttaatgcatctcttaaacaacaacttcaaaactcatgttctaatcaattgttccag

Basic information

species Arabidopsis thaliana
transcript AT5G54590.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G36140.2 (Glycine max), 5'ss of exon 5
GCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGGgtaagctgcttgctaa--aaccattcaccattttaatgcatctcttaaacaacaacttcaaa-actcatgttctaatcaattgttccag
| ||| |  ||| | | ||  ||||||||||||| ||  |||| ||||||||||| ||| | ||  |||||||||||||||||||||||||   |  |  ||  || |    |  ||| |  |   ||| || |   | || |  |     | |   |  |              
GTGAAGAGAATGGAGCTCTTGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGATGGGgtaagtgtcccgtgaactaaactgagataattctgctttctctatttagttataaatgtatttgttgacacttcag-------------

upper sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 5
GCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGGgtaagctgcttgctaaaaccattc----accattttaatgcatctcttaaacaacaacttcaaa-actcatgttctaatcaattgttccag
| ||| |  ||| | | ||| ||||||||||||| ||  |||| ||||||||||| ||| | ||  |||||||||||||||| |||||||| || |      | | |  |    |  ||| |  |   ||| || |   | ||||  |     | |   || |              
GTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGgtaag-tgttcatgtgatctacactgagataattctgctttctctatttagttataactgtatttgttgacactccag-------------

upper sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 4
GCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGGgtaagctgcttgctaa---------aaccattcaccattttaatgcatctcttaaacaacaacttcaaaactcatgttctaatcaattgttccag----------
  || ||  |||| ||  |||| |||||||||||  | || || |||||||| |||||| | ||  | |||||||||||||||||||||||||     ||||         || |||  | |  ||   ||  | |    || ||||   |   |  |  || |    |  ||| ||  |           
ATGAGAAGTATGAGCCATTGAGTTGGGATTTGAGGATTTACATAGCTTTAGATGTGGCAAGGGGCTTGGAGTATCTTCATGATGGGgtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccag