1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCATGGTGGTTCACGTGCTGCTGAATACCTGAAGGAACACCTGTTTAACAATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAgtgcgtctatatctcttgacataagatcttgttataatctaagaagtatgaagctcataagtcatctggtttccttcttacatggttaatttggcag
species | Arabidopsis thaliana |
transcript | AT5G53140.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAA ATGAAACATATAAACAAACTGATGTAGCATTCCTCGAGTCCGAAAAGGATAEST: gi|124795705|gb|EH885384.1|EH885384
genomic: CAATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAgtgcgtctat ... aatttggcagATGAAACATATAAACAAACTGATGTAGCATTCCTCGAGTCCGAAAAGGATA
EST: CAATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAA ATGAAACATATAAACAAACTGATGTAGCATT
genomic: CAATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAgtgcgtctat ... aatttggcagATGAAACATATAAACAAACTGATGTAGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATGGTGGTTCACGTGCTGCTGAATACCTGAAGGAACACCTGTTTAACAATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAgtgcgtctatatctcttgacataagatcttgttataatctaagaagtatgaagctcataagtcatctggtttccttcttacatggttaatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG