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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGCACACTCACTGAAAGTTGAGAAAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagatagcatctatgcttttgtccgattgttcttatcatctgagtctttcttctattaattgaggctgttgttcttctttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G53120.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829276|gb|CK118960.1|CK118960
EST:     AAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
genomic: AAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
EST: gi|86043708|gb|DR339463.1|DR339463
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGA
genomic: AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGA
EST: gi|86043711|gb|DR339466.1|DR339466
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
genomic: AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
EST: gi|86043709|gb|DR339464.1|DR339464
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTT
genomic: AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTT
EST: gi|86043705|gb|DR339460.1|DR339460
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCCGTACAGCTGAC
genomic: AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATC-GTACAGCTGAC
EST: gi|86043706|gb|DR339461.1|DR339461
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
genomic: A-GTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
EST: gi|47831735|gb|CK121419.1|CK121419
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
genomic: AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
EST: gi|86043707|gb|DR339462.1|DR339462
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
genomic: AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
EST: gi|86043704|gb|DR339459.1|DR339459
EST:     AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAG                         TCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC
genomic: AAGTTCTGTTCAAAGACAAGTCGGATTTTCAGGAAGTCCTAGTGTTCGAGgtttgagata ... ctttttgcagTCAGCCACGTACGGAAAGGTGCTTGTTCTAGATGGTATCGTACAGCTGACC