1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCACTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTCACTCCCCTCCCAAAAGgttctattctcatttacaagcattatgcaattactgttactctcttaatataatctctgtttcaaattttactaaatgaagcatattgttgttccacgttgatggaaacag
species | Arabidopsis thaliana |
transcript | AT5G52660.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCATGGACAAATAATGCGCAAACAATTAGCTTCACTCCCCTCCC-AAA- -AGGAGCAGGAGCTAATAACAATTGTTCTAGCAGTTCTGAAAATACTCCAAEST: gi|124803413|gb|EH891808.1|EH891808
genomic: TCCATGGACAAATAATGCGCAAACAATTAGCTTCACTCCCCTCCCAAAAGgttctattct ... atggaaacagCAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAA
EST: CGCAAACAATTAGCTTCACTCCCCTCCCAAAAG CAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATAACTCCA
genomic: CGCAAACAATTAGCTTCACTCCCCTCCCAAAAGgttctattct ... atggaaacagCAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATA-CTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCACTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTCACTCCCCTCCCAAAAGgttctattctcatttacaagcattatgcaattactgttactctcttaatataatctctgtttcaaattttactaaatgaagcatattgttgttccacgttgatggaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA