Sequence
atgc intronic sequence ATGC exonic sequenceCTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAGgcaagaatatataacccttttcaaaaataaacatatgagatatcaattgataatttgcatgttatttttgtttaacacgtgaattgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G52570.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G52570.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 5
CTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAGgcaagaatatataacccttttcaaaaataaacatatgagatatcaattgataatttgcatgttatttttgtttaacacgtgaattgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcag
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ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgactggtgcctatgcatttgtcgtctatatgtgcttgtgaccagtacatgacaaagcaatcctggtttccttgtaccgtc-ttctcgatctcaacgtgtgtgtggtcgtgcgtgcag----------------
upper sequence: AT5G52570.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv16s0050g01090.t01 (Vitis vinifera), 5'ss of exon 6
CTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAGgcaagaatat-ataaccct----tttcaaaaataaacatatgagatatcaattgataatttgcatgttatttttgtttaacacgtgaattgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcag
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CTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGCCCTAAGgtaagcccatcaccattttattttttccccaattaattttcaaaatttgaa--gggggattgaatactatgtg-gtgtggtgcag-----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86078127|gb|DR373884.1|DR373884EST: ACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAG GAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGG
genomic: ACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAGgcaagaatat ... aatggtgcagGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAGgcaagaatatataacccttttcaaaaataaacatatgagatatcaattgataatttgcatgttatttttgtttaacacgtgaattgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcag
- - - - - - - - - - - - - - - - - - - GCTGTT