1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAACAAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGgtttgtatctttattctctcgtctttaaattctcgttgcacattggttacatgcatgaccttctatctaattttgtgtccttctttaccacacag
species | Arabidopsis thaliana |
transcript | AT5G51700.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATG GATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAGEST: gi|86082923|gb|DR378682.1|DR378682
genomic: AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGgtttgtatct ... taccacacagGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG
EST: AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATG GATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAGEST: gi|164150474|gb|EL998546.1|EL998546
genomic: AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGgtttgtatct ... taccacacagGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG
EST: AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATG GATCCCAACCCAAAGAACAGAEST: gi|124756306|gb|EH846436.1|EH846436
genomic: AAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGgtttgtatct ... taccacacagGATCCCAACCCAAAGAACAGA
EST: CAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATG GATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG
genomic: CAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGgtttgtatct ... taccacacagGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAACAAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGgtttgtatctttattctctcgtctttaaattctcgttgcacattggttacatgcatgaccttctatctaattttgtgtccttctttaccacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG