1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TAGAGCAGCTGAGATTCTTGGTCACAAACGTGGTGAAAAAATTGTGCACCCAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagctttagtttgcattctcattagtcattaccaataattttgcatgcttaacgttcattcaattgcttacggtgttcgtgtaaccgattgcttttatttcctatatgtatgctcactgctctgtcaagtactacttgacggtcgtataattttggttttgtatag
species | Arabidopsis thaliana |
transcript | AT5G50950.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATEST: gi|116422670|gb|EG465262.1|EG465262
genomic: CCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAAT
EST: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTEST: gi|116467405|gb|EG509997.1|EG509997
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTEST: gi|116443356|gb|EG485948.1|EG485948
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTEST: gi|116456305|gb|EG498897.1|EG498897
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACT GTCATGCACACTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTEST: gi|116428316|gb|EG470908.1|EG470908
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACGTTTCCAACT GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTEST: gi|125059871|gb|EL128548.1|EL128548
genomic: CAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGT
EST: GATCACAATCTTCTAATGACACTTTTCCAACT GTCATGCACATTGCAGCTGCAACCGAGA
genomic: GATCACAATCTTCTAATGACACTTTTCCAACTgtaagcttta ... ttttgtatagGTCATGCACATTGCAGCTGCAACCGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGCAGCTGAGATTCTTGGTCACAAACGTGGTGAAAAAATTGTGCACCCAAATGACCATGTGAACAGATCACAATCTTCTAATGACACTTTTCCAACTgtaagctttagtttgcattctcattagtcattaccaataattttgcatgcttaacgttcattcaattgcttacggtgttcgtgtaaccgattgcttttatttcctatatgtatgctcactgctctgtcaagtactacttgacggtcgtataattttggttttgtatag
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