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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTACTGTTCGTGACAAGCTTGAATCACTTTGTAGAGAGTTACAACGTCAGAACAAAATGTTAATGgtttgttctttctttcttcttgcttactctacttggtgtgtcttgttttgaggaactaaccttttggtgtgtaaactaaatgttcctttgtataacag

Basic information

species Arabidopsis thaliana
transcript AT5G50840.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50840.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0019g03960.t01 (Vitis vinifera), 5'ss of exon 5
CTATTACTGTTCGTGACAAGCTTGAATCACTTTGTAGAGAGTTACAACGTCAGAACAAAATGTTAATGgtttgttctttctttcttcttgcttactctact---tggtgtgtct-tgttttgaggaactaaccttttggtgtgtaaactaaatgttcctttgtataacag
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CCATTGCTGTTCGAGATAAGCTTGAGTCACTGTGTAGGGAATTACAACGTCAGAACAAATTGCTAATGgtgtgctttctgtcttcaaatgccagctttaacagataatatgacaatgtctttttacaattttttttttctttccagatgccaattattttagtgttgt--