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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGTAGCTACTGCAATTACGTATATGAGACGGGTTTATATCAGgtatgcaatgtatttttgatatgatcgtatacatcaatgtgcatctttgtgtatgtgaggaatgaaatgagttaaattcttgtcatgccagtgtctctctatgttgcatctctgctatcaaaaacgttaactgtgttacgaaagttttcagttttggtgtctaatatcttccttttgttactatactatctcag

Basic information

species Arabidopsis thaliana
transcript AT5G48640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48640.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 4
GGTTGTAGCTACTGCAATTACGTATATGAGACGGGTTTATATCAGgtatgcaatgtatttttgatatgatcgtatacatcaatgtgcatctttgtgtatgtgaggaatgaaatgagttaaattcttgtcatgccagtgtctctctatgttgcatctctgctatcaaaaacgttaactgtgttacgaaagttttcagttttggtgtctaatatcttccttttgttactatactatctcag
||||||||||||||| ||||| ||||||||||| ||||| | |||||    ||||  |||||  |||  | | ||   |   | |   | | | | ||  |||      |   | |||  ||  || | ||   | ||| | |   | |||                                                                                        
GGTTGTAGCTACTGCCATTACATATATGAGACGTGTTTACACCAGgt----aatgc-tttttcttatcgtggaatttttttttttttttttgtat-tagatgatcctccatgggtgttctataatt-taattgaactgttttttc-tattgtg--------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054344|gb|DR350101.1|DR350101
EST:     GGTTGTAGCTACTGCAATTACGTATATGAGACGGGTTTATATCAG                         AAAGAGTATGGTAGAGTTTGAGCCTCGACTTGTTGCTCTTACGTGCTTGTA
genomic: GGTTGTAGCTACTGCAATTACGTATATGAGACGGGTTTATATCAGgtatgcaatg ... actatctcagAAAGAGTATGGTAGAGTTTGAGCCTCGACTTGTTGCTCTTACGTGCTTGTA
EST: gi|86086425|gb|DR382184.1|DR382184
EST:     GGTTGTAGCTACTGCAATTACGTATATGAGACGGGTTTATATCAG                         AAAGAGTATGGTAGAGTTTGAGCCTCGACTTGTTGCTCTTACGTGCTTGTA
genomic: GGTTGTAGCTACTGCAATTACGTATATGAGACGGGTTTATATCAGgtatgcaatg ... actatctcagAAAGAGTATGGTAGAGTTTGAGCCTCGACTTGTTGCTCTTACGTGCTTGTA