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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGGgtaagtttttgctagatcttataacaaaattgggattcattattgtcatgaagaaatgtttattgttgtttttgttgttgtgtaacttagtgttgttatgtggcag

Basic information

species Arabidopsis thaliana
transcript AT5G48580.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482915|gb|EG525507.1|EG525507
EST:     CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG                         GGGAA-CTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
genomic: CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
EST: gi|86081492|gb|DR377249.1|DR377249
EST:     CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
genomic: CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
EST: gi|124722350|gb|EH813752.1|EH813752
EST:     TGCACTATAGG                         GGGAAACTTACTGATGGAACTTGTATTCGATTCGAGTTTTGAAAGGGGTGA
genomic: TGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAAC-TGTATTCGATTCGAGTTTTGAAAGGGGTGA
EST: gi|164128008|gb|ES072960.1|ES072960
EST:     TACGATCAAGGTGCACTATAGGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGA
genomic: TACGATCAAGGTGCACTATA-GGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGA
EST: gi|164053533|gb|ES115447.1|ES115447
EST:     GGTGCACTATAGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTTGA
genomic: GGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGT-GA
EST: gi|164067796|gb|ES216355.1|ES216355
EST:     CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG                         GGGAAACGTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGG
genomic: CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAAC-TTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGG
EST: gi|164182996|gb|EL988568.1|EL988568
EST:     GGTGCACTATAGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
genomic: GGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
EST: gi|116469680|gb|EG512272.1|EG512272
EST:     CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
genomic: CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
EST: gi|125103707|gb|EL158014.1|EL158014
EST:     TGCACTATAGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
genomic: TGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
EST: gi|86084981|gb|DR380740.1|DR380740
EST:     CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
genomic: CATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
EST: gi|124746138|gb|EH836638.1|EH836638
EST:     AAGTTCAGGCTCACAAAGGTGATACGATTCAAGGTGCACTATAGG                         GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT
genomic: AAGTTCAGGCTCACAAAGGTGATACGA-TCAAGGTGCACTATAGGgtaagttttt ... tatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGAT