1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGCTTACCTATATGATGGTTACTGGGAAGACATTGGTACTATAGAGGCATTTTATAACGCTAATCTTGGAATCACCAAGAAACCAGTTCCTGATTTTAGgtacagtaaccgcattactacactctctattgtatctgaatgattacttaacttatctgaattcttgatgcag
species | Arabidopsis thaliana |
transcript | AT5G48300.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTTATAACGCTAATCTTGGAATCACCAAGAAACCAGTTCCTGATTTTAG TTTCTATGACCGTTCTGCTCCGAEST: gi|124737635|gb|EH829037.1|EH829037
genomic: TTTTATAACGCTAATCTTGGAATCACCAAGAAACCAGTTCCTGATTTTAGgtacagtaac ... cttgatgcagTTTCTATGACCGTTCTGCTCCGA
EST: CCTGATTTTAG TTTCTATGACCGTTCTGCTCCGATCTACACACAGCCGCGTTATTTACCACCEST: gi|86084119|gb|DR379878.1|DR379878
genomic: CCTGATTTTAGgtacagtaac ... cttgatgcagTTTCTATGACCGTTCTGCTCCGATCTACACACAGCCGCGTTATTTACCACC
EST: TCCTGATTTTAG TTTCTATGACCGTTCTGCTCCGATCTACACACAGCCGCGTTATTTACCACC
genomic: TCCTGATTTTAGgtacagtaac ... cttgatgcagTTTCTATGACCGTTCTGCTCCGATCTACACACAGCCGCGTTATTTACCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTTACCTATATGATGGTTACTGGGAAGACATTGGTACTATAGAGGCATTTTATAACGCTAATCTTGGAATCACCAAGAAACCAGTTCCTGATTTTAGgtacagtaaccgcattactacactctctattgtatctgaatgattacttaacttatctgaattcttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA