1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGTTGCTGAAATGGCAGCAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttcttagctgttgtaatgttgttcagaacagtcattgcatggattgtgatttcttcaacttcaagagtgtcgttcttgtgaatcttag
species | Arabidopsis thaliana |
transcript | AT5G48020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGEST: gi|116432353|gb|EG474945.1|EG474945
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGEST: gi|116432357|gb|EG474949.1|EG474949
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGEST: gi|116433075|gb|EG475667.1|EG475667
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGEST: gi|116433062|gb|EG475654.1|EG475654
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGEST: gi|116432354|gb|EG474946.1|EG474946
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGEST: gi|164100024|gb|ES174372.1|ES174372
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: TTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAEST: gi|116433069|gb|EG475661.1|EG475661
genomic: TTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAA
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAGEST: gi|125169307|gb|EL193417.1|EL193417
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTEST: gi|116432364|gb|EG474956.1|EG474956
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTT
EST: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAG GGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
genomic: CAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttctt ... tgaatcttagGGTCCTCATCTTCTTGCTCCAACGGGAAGTGATCTTAACTGTTACAACGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTGCTGAAATGGCAGCAATTGGGTTTGGTTTGCCTAAGGATGCATTTACATCACTCATGAAGCAGgtaagttcttagctgttgtaatgttgttcagaacagtcattgcatggattgtgatttcttcaacttcaagagtgtcgttcttgtgaatcttag
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC